New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 85065	62 (1.490)	9 (0.250)	9/236	2.8	14.0%	intergenic (+43/+87)	aroE/PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
	?	NC_002947	= 85104	56 (1.540)					intergenic (+82/+48)	aroE/PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
Rejected: Frequency below/above cutoff threshold.

GGGATGCTGGCTGAGCAGGCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/84915‑85065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgcgacgcaaggccgCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGCGCAGTTCAGCCAACACCGGCGCCGTATCCGGCCTCACGC  <  NC_002947/85104‑84961                                                                                                                                                                                                                                                                                                         GGGATGCTGGCTGAGCAGGCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCC                                                                                                                                                   >  1:250102/1‑150   GATGCTGGCTGAGCAGGCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGC                                                                                                                                                 <  1:41180/150‑1                            GCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGT                                                                                                                       >  2:11800/1‑150                                            GTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGG                                                                                                        <  1:712821/150‑1                                                 GTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGC                                                                                                  <  1:829232/150‑1                                                                               GAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGC                                                                    <  1:11800/150‑1                                                                                               TCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCG                                                                                   >  1:681070/1‑119                                                                                               TCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCG                                                                                   <  2:681070/119‑1                                                                                                    CGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTT                                                                                                    >  1:862793/1‑98                                                                                                    CGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTT                                                                                                    <  2:862793/98‑1                                                                                                                                       ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTG                                                                                                               <  1:439408/52‑1                                                                                                                                       ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTG                                                                                                               >  2:439408/1‑52                                                                                                                                            GACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGCGCAGTTCAGCCAACACCGGCGCCGTATCCGGCC        >  1:313077/1‑150                                                                                                                                               GCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGCGCAGTTCAGCCAACACCGGCGCCGTATCCGGCCTCA     >  2:881505/1‑150                                                                                                                                                  AGGCCACTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGCGCAGTTCAGCCAACACCGGCGCCGTATCCGGCCTCACGC  <  1:327898/150‑1                                                                                                                                                                                                                                                                                                         GGGATGCTGGCTGAGCAGGCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/84915‑85065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgcgacgcaaggccgCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGCGCAGTTCAGCCAACACCGGCGCCGTATCCGGCCTCACGC  <  NC_002947/85104‑84961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.