| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,648,886 | Δ12 bp | intergenic (‑123/+162) | oprB‑II ← / ← PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1648886 | 1648897 | 12 | 31 [0] | [0] 31 | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1648885 | 0 (0.000) | 31 (0.770) | 29/262 | 0.5 | 100% | intergenic (‑122/+174) | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| ? | NC_002947 | 1648898 = | 0 (0.000) | intergenic (‑135/+161) | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor | |||||
TTTAGGCAGTTGGAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAGGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGT > NC_002947/1648746‑1649030 | tttAGGCAGTTGGAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaaga > 2:657187‑M1/1‑140 (MQ=255) aGTTGGAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattg > 1:472011‑M1/1‑133 (MQ=255) gAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGATTGCGGTGGGGAGGAGATAagaaaaaagacaaattgtcgca > 2:779231‑M1/1‑128 (MQ=255) gaTAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattg < 1:657187‑M1/150‑31 (MQ=255) cgcTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgtt < 2:472011‑M1/150‑36 (MQ=255) aaaaaaaCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaatt < 1:566962‑M1/112‑17 (MQ=255) aaaaaaaCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaatt > 2:566962‑M1/1‑96 (MQ=255) aaCGGCAAGCGCATCGAAGGACGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaat > 2:487551‑M1/1‑91 (MQ=255) ggCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcga < 1:529760‑M1/150‑63 (MQ=255) ggCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcga < 2:451015‑M1/150‑63 (MQ=255) gcATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcaga > 1:861923‑M1/1‑81 (MQ=255) gcATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcaga < 2:861923‑M1/105‑25 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaaca > 2:515380‑M1/1‑76 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaaca < 1:515380‑M1/123‑48 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaat > 1:213032‑M1/1‑76 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaat < 2:213032‑M1/91‑16 (MQ=255) cccTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgtttaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcac > 1:835287‑M1/1‑65 (MQ=255) cTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcaccc > 1:479204‑M1/1‑63 (MQ=255) tCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccg > 2:416124‑M1/1‑62 (MQ=255) gACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgcgaatgcgccggtt > 2:1017428‑M1/1‑48 (MQ=255) aCAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgcgaatgcgccggttg > 1:544872‑M1/1‑47 (MQ=255) aaGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgcgaatgcgccggttgcc < 1:779231‑M1/150‑106 (MQ=255) cGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaa > 1:992553‑M1/1‑36 (MQ=255) cGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaa < 2:992553‑M1/42‑7 (MQ=255) aaGCGTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgcgaatgcgccggttgccctaccatcgtattc > 1:239488‑M1/1‑31 (MQ=255) gTTTCAGCTTGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgcgaatgcgccggttgccctaccatcgtattcgcgg < 2:544872‑M1/150‑124 (MQ=255) ttGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgc < 2:318375‑M1/108‑90 (MQ=255) ttGCGGCGGGGAGGATATAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgc > 1:318375‑M1/1‑19 (MQ=255) gaggaTATAagaaaaaagacaaattgtcgcagaggattgttgt > 1:85336‑M1/1‑9 (MQ=255) gaggaTATAagaaaaaagacaaattgtcgcagaggattgttgt < 2:85336‑M1/43‑35 (MQ=255) atatAagaaaaaagacaaattgtcgcagaggattgttgttgaacgggcaacagtcgtcattaatcgaggcaggtgtaggagcgggttcacccgcgaatgcgccggttgccctaccatcgtattcgcgggtgaacccgttcctacaccgat < 1:416124‑M1/150‑146 (MQ=255) | TTTAGGCAGTTGGAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAGGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGT > NC_002947/1648746‑1649030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |