| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,648,886 | Δ12 bp | intergenic (‑123/+162) | oprB‑II ← / ← PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1648886 | 1648897 | 12 | 31 [0] | [0] 31 | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1648885 | 0 (0.000) | 31 (0.770) | 29/262 | 0.5 | 100% | intergenic (‑122/+174) | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| ? | NC_002947 | 1648898 = | 0 (0.000) | intergenic (‑135/+161) | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor | |||||
GAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAGGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGAT > NC_002947/1648758‑1649042 | tttaggcagttggaacatgagatagcgctatcttttgattattgaaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGa > 2:657187‑M2/141‑150 (MQ=255) agttggaacatgagatagcgctatcttttgattattgaaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTg > 1:472011‑M2/134‑150 (MQ=255) gaacatgagatagcgctatcttttgattattgaaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagattgcggtggggaggagataAGAAAAAAGACAAATTGTCGCa > 2:779231‑M2/129‑150 (MQ=255) gatagcgctatcttttgattattgaaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGAttg < 1:657187‑M2/30‑1 (MQ=255) cgctatcttttgattattgaaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGAttgttgtt < 2:472011‑M2/35‑1 (MQ=255) aaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAAtt < 1:566962‑M2/16‑1 (MQ=255) aaaaaaacggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAAtt > 2:566962‑M2/97‑112 (MQ=255) aacggcaagcgcatcgaaggacgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAAt > 2:487551‑M2/92‑150 (MQ=255) ggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGa < 1:529760‑M2/62‑1 (MQ=255) ggcaagcgcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGa < 2:451015‑M2/62‑1 (MQ=255) gcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCaga < 2:861923‑M2/24‑1 (MQ=255) gcatcgaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCaga > 1:861923‑M2/82‑105 (MQ=255) gaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAAt < 2:213032‑M2/15‑1 (MQ=255) gaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAAt > 1:213032‑M2/77‑91 (MQ=255) gaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACa < 1:515380‑M2/47‑1 (MQ=255) gaagggcgggcccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACa > 2:515380‑M2/77‑123 (MQ=255) ccctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTTAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCAc > 1:835287‑M2/66‑150 (MQ=255) ctcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCAccc > 1:479204‑M2/64‑150 (MQ=255) tcaatggatatggcgacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCcg > 2:416124‑M2/63‑150 (MQ=255) gacaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGtt > 2:1017428‑M2/49‑150 (MQ=255) acaagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTg > 1:544872‑M2/48‑150 (MQ=255) aagattgttcgatgaagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGcc < 1:779231‑M2/105‑1 (MQ=255) cgatgaagcgtttcagcttgcggcggggaggatataAGaaaa > 1:992553‑M2/37‑42 (MQ=255) cgatgaagcgtttcagcttgcggcggggaggatataAGaaaa < 2:992553‑M2/6‑1 (MQ=255) aagcgtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTc > 1:239488‑M2/32‑150 (MQ=255) gtttcagcttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg < 2:544872‑M2/123‑1 (MQ=255) ttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCcgc < 2:318375‑M2/89‑1 (MQ=255) ttgcggcggggaggatataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCcgc > 1:318375‑M2/20‑108 (MQ=255) gaggatataAGAAAAAAGACAAATTGTCGCAGAGGAttgttgt > 1:85336‑M2/10‑43 (MQ=255) gaggatataAGAAAAAAGACAAATTGTCGCAGAGGAttgttgt < 2:85336‑M2/34‑1 (MQ=255) atataAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGAt < 1:416124‑M2/145‑1 (MQ=255) | GAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAGGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGAT > NC_002947/1648758‑1649042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |