| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4625972 = | NA (NA) | 29 (0.700) | 25/270 | 0.8 | 90.6% | intergenic (+4519/+45) | PP_5654/PP_4091 | phosphotriesterase/transposase |
| ? | NC_002947 | = 4965172 | 3 (0.070) | coding (231/1476 nt) | fleQ | transcriptional regulator FleQ | |||||
AACCTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCAC > NC_002947/4625831‑4626116 | aaCCTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGAt > 1:545497/1‑150 (MQ=255) tcTGATTGCCTAGGTACTCACCCAAACACAGCGCCGAGTGATTTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATcc < 2:722819/149‑1 (MQ=255) ccTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATcc < 1:13525/150‑1 (MQ=255) ccTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATcc > 2:137594/1‑150 (MQ=255) cTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCa > 1:924796/1‑150 (MQ=255) tGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCaa > 1:722819/1‑149 (MQ=255) tGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCAt > 1:499768/1‑150 (MQ=255) tGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCAt > 2:682565/1‑150 (MQ=255) ttGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGaa < 2:691865/150‑1 (MQ=255) gCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAcc < 2:518957/150‑1 (MQ=255) gAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCa > 1:38053/1‑150 (MQ=255) aCTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTAc < 1:137594/150‑1 (MQ=255) aCCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACcaca > 1:408891/1‑150 (MQ=255) ccAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAg > 2:984711/1‑150 (MQ=255) acaGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCCCAAGGTGGaa < 1:682565/150‑1 (MQ=255) caGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAg < 1:952344/150‑1 (MQ=255) ccGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCaaa < 1:733343/150‑1 (MQ=255) ggATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAg > 1:450962/1‑133 (MQ=255) ggATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAg < 2:450962/133‑1 (MQ=255) tGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGt < 1:493274/150‑1 (MQ=255) tCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTgg > 1:273815/1‑150 (MQ=255) ccAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGc < 2:586369/150‑1 (MQ=255) cAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGcc > 1:564196/1‑149 (MQ=255) aaCGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACATAACCGATCCATGaa < 2:1024456/109‑1 (MQ=255) aaCGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACATAACCGATCCATGaa > 1:1024456/1‑109 (MQ=255) ccAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGc < 1:898310/150‑1 (MQ=255) aaCGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCa < 1:984711/150‑1 (MQ=255) gCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAc > 1:166435/1‑89 (MQ=255) gCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAAc < 2:166435/89‑1 (MQ=255) gCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATgg > 1:660217/1‑150 (MQ=255) aCCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGgcagc > 2:219542/1‑150 (MQ=255) cTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGcagcag > 1:275462/1‑150 (MQ=255) gAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAgcgc > 2:236422/1‑150 (MQ=255) aaaGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCtt > 1:1004654/1‑150 (MQ=255) atcatcGGTCGCTTCCTTGACCTACCCCACCCGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTTGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTa < 2:247805/150‑1 (MQ=255) atcatcGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCCGCGATTCGTa < 2:275462/150‑1 (MQ=255) catcGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGt < 2:545497/150‑1 (MQ=255) atcGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGt > 2:248856/1‑88 (MQ=255) atcGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGt < 1:248856/88‑1 (MQ=255) gTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCt > 2:544934/1‑150 (MQ=255) gCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTAcc < 1:219542/150‑1 (MQ=255) tCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGAt < 1:544934/150‑1 (MQ=255) aCCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTAGCACAGGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCg < 2:31461/150‑1 (MQ=255) cTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACTGTTCCATGGCAGCAGCTCTTCGTAGTCTGTTACCGATGAGGCGTg < 2:38053/150‑1 (MQ=255) cTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATgg > 2:431525/1‑114 (MQ=255) cTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATgg < 1:431525/114‑1 (MQ=255) tACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGc > 1:629345/1‑150 (MQ=255) tACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGc > 2:519154/1‑150 (MQ=255) acacGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGt > 1:711080/1‑150 (MQ=255) acGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTAc > 2:738383/1‑129 (MQ=255) acGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTAc < 1:738383/129‑1 (MQ=255) gggCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCt > 1:1014019/1‑150 (MQ=255) ggCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTc < 2:629345/150‑1 (MQ=255) aaGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTgg > 2:677783/1‑75 (MQ=255) aaGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTgg < 1:677783/75‑1 (MQ=255) cTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGt < 2:273815/150‑1 (MQ=255) aTTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTgg < 2:924796/150‑1 (MQ=40) gggACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCa < 2:711080/150‑1 (MQ=38) agacgaCGTAACCGATCCATGAACGCCACCTACCACAAGGTGGAAGGCAAAGTTAGCGTGGCATCTCTGGCGAACAGTGCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGcc < 2:564196/145‑1 (MQ=11) acacAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGc > 2:840117/1‑149 (MQ=35) acacAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGc < 1:840117/149‑1 (MQ=35) acaACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTGGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCAc > 2:64474/1‑150 (MQ=18) aaCGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCAt > 1:874049/1‑79 (MQ=34) aaCGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCAt < 2:874049/79‑1 (MQ=34) aCGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATgg > 1:328630/1‑80 (MQ=32) aCGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATgg < 2:328630/80‑1 (MQ=32) | AACCTGATTGCCGAGGTACTCACCCAAACACAGCGCCGAGGGATGTCCAACGCCGCCAATGACGAAAACGCTAACCTCGAAAAGATCATCGGTCGCTTCCTTGACCTACCCCACACGGGCAAGACCTATTCGGGACACAACGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCAC > NC_002947/4625831‑4626116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |