New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5759491	40 (0.900)	11 (0.320)	7/210	3.4	26.9%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759519	29 (0.850)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
Rejected: Coverage evenness skew score above cutoff.

GCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATA  >  NC_002947/5759345‑5759639                                                                                                                                                    |                                                                                                                                                     gcgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCa                                                                                                                                                   <  1:430231/150‑1 (MQ=255)     ctgcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGcc                                                                                                                                               <  1:476391/150‑1 (MQ=255)       gcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGa                                                                                                                                             >  1:717900/1‑150 (MQ=255)        ccGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAg                                                                                                                                            <  2:17805/150‑1 (MQ=255)        ccGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAg                                                                                                                                            <  1:918427/150‑1 (MQ=255)                 ccGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGgcg                                                                                                                                   <  2:657883/150‑1 (MQ=255)                        gCCGTATCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATccc                                                                                                                            <  2:1039311/150‑1 (MQ=255)                        gCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATccc                                                                                                                            <  1:513194/150‑1 (MQ=255)                                    aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                                                                                <  2:243704/150‑1 (MQ=255)                                    aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                                                                                <  1:488151/150‑1 (MQ=255)                                     ccTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg                                                                                                               <  2:717900/150‑1 (MQ=255)                                      cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGCATTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGt                                                                                                              <  1:1036123/150‑1 (MQ=255)                                                        gTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGccc                                                                                            <  2:931196/150‑1 (MQ=255)                                                             ggTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGcc                                                                                       >  1:479375/1‑150 (MQ=255)                                                                gtATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGGGTTGCCTGTGAGGGCGTCCTCGCGGGCAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGc                                                                                    >  2:573887/1‑150 (MQ=255)                                                                       gCGTGGCGGCAGAACGGGTTTGGCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑ATCGGGTGGCTGACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaa                                                                             <  1:603012/150‑1 (MQ=37)                                                                         gTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAg                                                                                                                                            <  2:526696/85‑1 (MQ=255)                                                                         gTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAg                                                                                                                                            >  1:526696/1‑85 (MQ=255)                                                                               gcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg                                                                                                               <  1:486931/108‑1 (MQ=255)                                                                               gcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg                                                                                                               >  2:486931/1‑108 (MQ=255)                                                                                       ggTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGCGAGGGTTTCCCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGgc                                                             <  2:844041/150‑1 (MQ=255)                                                                                       ggTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGAGGTCTGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGgc                                                             <  1:874248/150‑1 (MQ=255)                                                                                             ccGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTc                                                       >  1:864686/1‑150 (MQ=255)                                                                                                     tGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                                                                                <  1:1026111/85‑1 (MQ=255)                                                                                                     tGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg                                                                                                                >  2:1026111/1‑85 (MQ=255)                                                                                                     tGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAAcc                                               >  2:738638/1‑150 (MQ=255)                                                                                                            ttGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt                                                     <  2:326339/137‑1 (MQ=255)                                                                                                            ttGCCTGTGCGGGCCTCTTCGCGGGCAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt                                                     >  1:326339/1‑137 (MQ=255)                                                                                                                        gCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGcaca                             <  2:318262/149‑1 (MQ=255)                                                                                                                        gCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGcaca                             >  1:318262/1‑149 (MQ=255)                                                                                                                        gCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCGCTCTTGAAACCGGCAGTAATTACTGAACAg                            >  2:892769/1‑150 (MQ=255)                                                                                                                          ctctTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa                          >  1:653970/1‑150 (MQ=255)                                                                                                                          ctctTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGGAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTATTGCACAGTa                          >  1:852766/1‑150 (MQ=255)                                                                                                                           tctTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAg                         >  1:964273/1‑150 (MQ=255)                                                                                                                                gcgGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGTGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa                          >  2:453722/1‑144 (MQ=255)                                                                                                                                gcgGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGTGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTa                          <  1:453722/144‑1 (MQ=255)                                                                                                                                         cccGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCt           >  1:211262/1‑150 (MQ=255)                                                                                                                                          ccGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCtt          >  1:310307/1‑150 (MQ=255)                                                                                                                                           cGCTCCG‑ACGCAGGCAGAGGGAACGGCCCATTCCCCTGTAGGAGGGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCggatc         <  1:573887/150‑5 (MQ=255)                                                                                                                                                   aCGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATa  <  1:748008/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT‑ACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATA  >  NC_002947/5759345‑5759639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.