| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1264252 | 28 (1.270) | 4 (0.190) | 4/244 | NT | 12.8% | coding (161/1659 nt) | PP_1105 | ATP‑dependent DNA ligase |
| ? | NC_002947 | = 1264274 | 28 (1.330) | coding (139/1659 nt) | PP_1105 | ATP‑dependent DNA ligase | |||||
AAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1264154‑1264252‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggCGCCCACGCCAGCTGGTGCCCACCCGCCTTCTACGCGAACTGGCGACGACGCTGGCTGGCCTGCCGGACTGGCTTTTCGAAGAAAGCTATCAGGCCGTGGGCGACCTGGCCGAGACCATTTCGCTGCTGCTGCCGCTGCACGCCGATG < NC_002947/1264274‑1264127 AAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGCCCACGCCAGCTGGTGCCCACCCGCCTTCTAC < 1:80677/133‑1AAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGCCCACGCCAGCTGGTGCCCACCCGCCTTCTAC > 2:80677/1‑133 AGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGCCCACGCCAGCTGGTGCCCACCCGCCTT > 1:485488/1‑78 AGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGCCCACGCCAGCTGGTGCCCACCCGCCTT < 2:485488/78‑1 GGGCGCCCACGCCAGCTGGTGCCCACCCGCCTTCTACGCGAACTGGCGACGACGCTGGCTGGCCTGCCGGACTGGCTTTTCGAAGAAAGCTATCAGGCCGTGGGCGACCTGGCCGAGACCATTTCGCTGCTGCTGCCGCTGCACGCCGAT > 2:488662/1‑150 GGCGCCCACGCCAGCTGGTGCCCACCCGCCTTCTACGCGAACTGGCGACGACGCTGGCTGGCCTGCCGGACTGGCTTTTCGAAGAAAGCTATCAGGCCGTGGGCGACCTGGCCGAGACCATTTCGCTGCTGCTGCCGCTGCACGCCGATG < 2:453145/150‑1 AAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1264154‑1264252‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggCGCCCACGCCAGCTGGTGCCCACCCGCCTTCTACGCGAACTGGCGACGACGCTGGCTGGCCTGCCGGACTGGCTTTTCGAAGAAAGCTATCAGGCCGTGGGCGACCTGGCCGAGACCATTTCGCTGCTGCTGCCGCTGCACGCCGATG < NC_002947/1264274‑1264127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |