New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1264252	28 (1.270)	4 (0.190)	4/244	NT	12.8%	coding (161/1659 nt)	PP_1105	ATP‑dependent DNA ligase
	?	NC_002947	= 1264274	28 (1.330)					coding (139/1659 nt)	PP_1105	ATP‑dependent DNA ligase

CATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGC  >  NC_002947/1264127‑1264423                                                                                                                                                    |                                                                                                                                                      cATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcc                                                                                                                                                     <  2:453145‑M2/150‑3 (MQ=255)  aTCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGccc                                                                                                                                                    >  2:488662‑M2/1‑147 (MQ=255)                      gcagcGAAAGGGGCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAACCAGGTCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCg                                                                                                                                <  2:77416/150‑1 (MQ=255)                                  tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCAt                                                                                                                    >  1:163923/1‑150 (MQ=255)                                  tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGGGCACCAGCTGGAGTGCGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCAt                                                                                                                    >  2:555837/1‑150 (MQ=255)                                   ctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATc                                                                                                                   >  1:559418/1‑150 (MQ=255)                                       gCCAGGTCGCCCAACACCTGATAGCGTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcg                                                                                                               >  2:139573/1‑150 (MQ=255)                                                      gCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggc                                                                                                             <  2:519387/137‑1 (MQ=255)                                                      gCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggc                                                                                                             >  1:519387/1‑137 (MQ=255)                                                       ccTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGa                                                                                               >  2:418864/1‑150 (MQ=255)                                                        cTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACAACGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGaa                                                                                              <  1:555837/150‑1 (MQ=255)                                                                tttCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                      >  1:475199/1‑150 (MQ=255)                                                                     tcGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGt                                                                                 >  1:295181/1‑150 (MQ=255)                                                                          aaGCCAGTCCGGCAGGCCACCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTc                                                                            <  2:371582/150‑1 (MQ=255)                                                                             ccAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAg                                                                         >  1:466640/1‑150 (MQ=255)                                                                                 tCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTg                                                                     <  2:466640/150‑1 (MQ=255)                                                                                                 gcGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAggtgg                                                     <  2:475199/150‑1 (MQ=255)                                                                                                         gCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAgg                                                        >  1:346474/1‑139 (MQ=255)                                                                                                         gCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAgg                                                        <  2:346474/139‑1 (MQ=255)                                                                                                                cgcgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCa                                      <  1:139573/150‑1 (MQ=255)                                                                                                                  cgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAgg                                    <  2:163923/150‑1 (MQ=255)                                                                                                                   gTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccattt                                                    <  1:80677‑M2/133‑100 (MQ=255)                                                                                                                   gTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccattt                                                    >  2:80677‑M2/1‑34 (MQ=255)                                                                                                                    tAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAACATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGaa                                  >  2:108954/1‑150 (MQ=255)                                                                                                                      gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa                                <  2:295181/150‑1 (MQ=255)                                                                                                                      gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa                                <  1:472029/150‑1 (MQ=255)                                                                                                                      gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa                                <  2:559418/150‑1 (MQ=255)                                                                                                                       aaGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggact                                                                                                       >  1:485488‑M2/1‑30 (MQ=255)                                                                                                                       aaGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggact                                                                                                       <  2:485488‑M2/78‑49 (MQ=255)                                                                                                                           cGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTa                           <  1:453145/150‑1 (MQ=255)                                                                                                                           cGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTa                           <  1:418864/150‑1 (MQ=255)                                                                                                                                            gCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGc          >  1:175387/1‑150 (MQ=255)                                                                                                                                               tGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAg                                           >  2:266230/1‑114 (MQ=255)                                                                                                                                               tGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAg                                           <  1:266230/114‑1 (MQ=255)                                                                                                                                                    gcccgccGGCCAGGAAATACACCGCCCAGGCAGAATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGc  >  1:146522/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGC  >  NC_002947/1264127‑1264423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.