New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2503705	14 (0.640)	3 (0.150)	3/230	NT	16.9%	intergenic (+21/‑212)	speB/PP_2197	agmatinase/hypothetical protein
	?	NC_002947	= 2503767	17 (0.860)					intergenic (+83/‑150)	speB/PP_2197	agmatinase/hypothetical protein

TCAACCTGGTAGGCATGGACTTGGTGGAAGTGGCGCCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2503545‑2503705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccattcgcgggcGCGCCCGCTCCACGGTCACCCACAGATTTCTGGCCCTGTGAGACACGTGTGGGAGCGGGCTTGCCCGCGAATGGCCGCAAAATCTACTGGCCGTTGTCCACCTTGTGCCGCGCCGCATACAGGCACAGCATCTCCATG  <  NC_002947/2503767‑2503630                                                                                                                                                                                                                                                                                                             TCAACCTGGTAGGCATGGACTTGGTGGAAGTGGCGCCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGC                                                                                                                                                       >  2:558967/1‑150            GGCATGGACTTGGTGGAAGGGGCGCCAGCCTATGACCATGCCGATATCCCCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCGGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGC                                                                                                                                            <  1:553989/150‑1                                                                               CCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCGCGCCCGCTCCACGGTCACCCACAGATTTCTGGCCCTGTGAGACACGTGTGGGAGCGGGCTTGC                                                                            >  1:136977/1‑147                                                                               CCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCGCGCCCGCTCCACGGTCACCCACAGATTTCTGGCCCTGTGAGACACGTGTGGGAGCGGGCTTGC                                                                            <  2:136977/147‑1                                                                                    GCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCGCGCCCGCTCCACGGTCACCCACAGATTTCTGGCCCTGTGAGACACGTGTGGGAGCGGGCTTGCCCGCGAAT                                                                    <  2:82771/150‑1                                                                                       ATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCG                                                                                                                                               <  1:561262/72‑1                                                                                       ATGGAGATGCTGTGCATGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCG                                                                                                                                               >  2:561262/1‑72                                                                                                                                                      CCATTCGCGGGCGCGCCCGCTCCACGGTCACCCACAGATTTCTGGCCCTGTGAGACACGTGTGGGAGCGGGCTTGCCCGCGAATGGCCGCAAAATCTACTGGCCGTTGTCCACCTTGTGCCACGCCGCATACAGGCACAGCATCTCCATG  <  1:152880/150‑1                                                                                                                                                                                                                                                                                                             TCAACCTGGTAGGCATGGACTTGGTGGAAGTGGCGCCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2503545‑2503705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccattcgcgggcGCGCCCGCTCCACGGTCACCCACAGATTTCTGGCCCTGTGAGACACGTGTGGGAGCGGGCTTGCCCGCGAATGGCCGCAAAATCTACTGGCCGTTGTCCACCTTGTGCCGCGCCGCATACAGGCACAGCATCTCCATG  <  NC_002947/2503767‑2503630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.