| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5119663 | 34 (1.540) | 4 (0.200) | 4/228 | NT | 10.9% | intergenic (+48/+83) | PP_4505/PP_4506 | sensor histidine kinase/nitroreductase family protein |
| ? | NC_002947 | = 5119680 | 35 (1.780) | intergenic (+65/+66) | PP_4505/PP_4506 | sensor histidine kinase/nitroreductase family protein | |||||
CATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5119526‑5119663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCTCCAGCATC < NC_002947/5119680‑5119540 CATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACA > 2:33075/1‑150 CTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACATCCCCTGAAGGAGCGGGT < 1:33075/150‑1 ACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAAC < 1:221958/95‑1 ACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAAC > 2:221958/1‑95 CCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGG < 1:199195/103‑1 CCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGG > 2:199195/1‑103 CCCGCTCCTACAACAGCATCCACATCTCCTGTAGGAGCGAGTTTACCCGCGAAGACGCCTAGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTATCCAGC > 2:192067/1‑150 CCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCC < 1:392915/119‑1 CCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCC > 2:392915/1‑119 GCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCTCCAGCATC < 1:264637/150‑1 CAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACC > 1:457024/1‑37 CAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACC < 2:457024/37‑1 CATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5119526‑5119663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCTCCAGCATC < NC_002947/5119680‑5119540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |