New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5119663	34 (1.540)	4 (0.200)	4/228	NT	10.9%	intergenic (+48/+83)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein
	?	NC_002947	= 5119680	35 (1.780)					intergenic (+65/+66)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein

GATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAG  >  NC_002947/5119540‑5119829                                                                                                                                             |                                                                                                                                                      gATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTtgtaggagc                                                                                                                                              <  1:264637‑M2/150‑10 (MQ=255)    gCTGGATAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCTAGGCGTCTTCGCGGGTAAACTCGCTCCTACAGGAGATGTGGATGCTGTtgtaggagcggg                                                                                                                                           >  2:192067‑M2/1‑138 (MQ=255)                           ggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATg                                                                                                                    >  2:65485/1‑150 (MQ=255)                            gtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGCGCACATCGGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGCCAACCCGCGAAGAGGCCGGATGc                                                                                                                   >  1:178439/1‑150 (MQ=255)                                 tgGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGa                                                                                                              <  2:133837/150‑1 (MQ=255)                                  ggCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTtgtaggagcgg                                                                                                                                            >  2:392915‑M2/1‑108 (MQ=255)                                  ggCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTtgtaggagcgg                                                                                                                                            <  1:392915‑M2/119‑12 (MQ=255)                                   gCCAGGCTGGAGTTGCCCTTGGCTGGGGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGGGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGGGGGCTTATGCCTTGATg                                                                                                            <  2:82132/150‑1 (MQ=38)                                    ccAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGAAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGc                                                                                                           >  1:473804/1‑150 (MQ=255)                                      aGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCAt                                                                                                         <  1:241875/150‑1 (MQ=255)                                         cTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGaa                                                                                                      <  2:264637/150‑1 (MQ=255)                                            gAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCa                                                                                                   >  1:27448/1‑150 (MQ=255)                                            gAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCa                                                                                                   <  1:508101/150‑1 (MQ=255)                                                   ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAt                                                                                                                     <  1:513916/125‑1 (MQ=255)                                                   ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAt                                                                                                                     >  2:513916/1‑125 (MQ=255)                                                   ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCa                                                                                              >  2:287677/1‑148 (MQ=255)                                                   ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCa                                                                                              <  1:287677/148‑1 (MQ=255)                                                   ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                                                                            <  2:559280/150‑1 (MQ=255)                                                         cTGGAGCGGCAGGAAATGAAAGGGGGGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAgg                                                                                      <  2:272288/150‑1 (MQ=38)                                                           ggAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGtt                                                                                    >  1:169133/1‑150 (MQ=255)                                                            gAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTa                                                                                   <  2:27448/150‑1 (MQ=255)                                                             aGCGGCAGGAAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTAc                                                                                  <  2:473804/150‑1 (MQ=255)                                                                 gcaggcagTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCcgc                                                                                                                                  <  2:302501/98‑1 (MQ=255)                                                                 gcaggcagTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCcgc                                                                                                                                  >  1:302501/1‑98 (MQ=255)                                                                       agTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                                                                           <  1:228080/99‑1 (MQ=255)                                                                       agTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                                                                           >  2:228080/1‑99 (MQ=255)                                                                       agTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGc                                                                        <  1:65485/150‑1 (MQ=255)                                                                                   gCAAAGGCGCCAGGCCTCTTCGCGGGGAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCACAAGAGCTGAAGAGTGAAGCAGCCCAAGGCCAGTTTACTCACCCCAGCTACTAACGaaaa                                                            >  2:15041/1‑149 (MQ=37)                                                                                    cAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTCATGCATGAATCAGCGCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATc                                                           >  1:7115/1‑150 (MQ=255)                                                                                               ggCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCa                                                <  1:118324/150‑1 (MQ=255)                                                                                               ggCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCa                                                <  1:118199/150‑1 (MQ=255)                                                                                                  ctctTCGCGGGTAAACCCGCTCCTCCAGGTGATGTGGATGTTGTTGTAGGCGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCa                                             <  1:424305/150‑1 (MQ=255)                                                                                                           ggTAAACCCGCTCCTACAGGGGATGTGGATGCTGTtg                                                                                                                                                     <  2:457024‑M2/37‑3 (MQ=255)                                                                                                           ggTAAACCCGCTCCTACAGGGGATGTGGATGCTGTtg                                                                                                                                                     >  1:457024‑M2/1‑35 (MQ=255)                                                                                                                aCCCGCTCCTTCAGGGGATGTGGATGCTGTtgtaggagcgggtttacccgcgaagaggcctggcgcctttgcaccccatcaactgcctgccgctccagccaagggcaactccagcctggccacaaacccaccctgtggatgattctccag                               <  1:33075‑M2/150‑121 (MQ=255)                                                                                                                 cccGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCcgcg                              >  2:96346/1‑150 (MQ=255)                                                                                                                  ccGCTCCTACAGGGGATGTGGATGCTGTtgtaggagcgggtttacccgcgaagaggcctggcgcctttgcaccccatcaactgcctgccgctccagccaaggg                                                                            <  1:199195‑M2/103‑76 (MQ=255)                                                                                                                  ccGCTCCTACAGGGGATGTGGATGCTGTtgtaggagcgggtttacccgcgaagaggcctggcgcctttgcaccccatcaactgcctgccgctccagccaaggg                                                                            >  2:199195‑M2/1‑28 (MQ=255)                                                                                                                  ccGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAAt                                                            >  1:557509/1‑119 (MQ=255)                                                                                                                  ccGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAAt                                                            <  2:557509/119‑1 (MQ=255)                                                                                                                      tCCTACAGGGGATGTGGATTCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAg                                               <  1:544745/128‑1 (MQ=255)                                                                                                                      tCCTACAGGGGATGTGGATTCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAAGCAGCCGTTGCCAg                                               >  2:544745/1‑128 (MQ=255)                                                                                                                              gggATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAg                                                                                       <  2:133600/80‑1 (MQ=255)                                                                                                                              gggATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAg                                                                                       >  1:133600/1‑80 (MQ=255)                                                                                                                                  tgtgGATGCTGTtgtaggagcgggtttacccgcgaagaggcctggcgcctttgcaccccatcaactgcctgccgctccagccaagggcaactccagcctggccacaaacccaccctgtggatgattctccagcatcaggctaccgccatg             >  2:33075‑M2/1‑12 (MQ=255)                                                                                                                                            gttgtAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACa   >  1:370273/1‑150 (MQ=255)                                                                                                                                             ttgtAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGAGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAg  <  2:178439/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      GATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAG  >  NC_002947/5119540‑5119829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.