New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5200727	33 (1.500)	3 (0.140)	3/246	NT	8.9%	coding (324/774 nt)	yafJ	amidotransferase
	?	NC_002947	= 5200748	30 (1.420)					coding (303/774 nt)	yafJ	amidotransferase

CGGTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5200610‑5200727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCAACTGGTGCTTCGCGCACAACGGCCAGCTGGGTGACTTCAAGGGCCTGGCCAGTTTCTACCGGCCAGTGGGCGACACCGACAGCGAAGCGGCCTTCTGCGACTTGCTCAACCGCATCCGCAGCGCCTTCCCCGAACCGGTGCCGGT  <  NC_002947/5200748‑5200602                                                                                                                                                                                                                                                                           CGGTTCCGGGAAGGCGCTGGGGATGCGGTTGCGGAGTCCGTAGAAGACCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGCAACTGGTGCTTCGCGCACAACGGCCAGCTGG                                                                                                                     <  2:429686/150‑1                                                CCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGCAACTGGTGCTTCGCGCACAACGGCCAGCTGGG                                                                                                                    >  1:176104/1‑104                                                CCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGCAACTGGTGCTTCGCGCACAACGGCCAGCTGGG                                                                                                                    <  2:176104/104‑1                                                                                                                    CCGCAACTGGTGCTTCGCGCACAACGGCCAGCTGGGTGACTTCAAGGGCCTGGCCAGTTTCTACCGGCCAGTGGGCGACACCGACAGCGAAGCGGCCTTCTGCGACTTGCTCAACCGCATCCGCAGCGCCTTCCCCGAACCGGTGCCGGT  <  1:364803/150‑1                                                                                                                                                                                                                                                                           CGGTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5200610‑5200727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCAACTGGTGCTTCGCGCACAACGGCCAGCTGGGTGACTTCAAGGGCCTGGCCAGTTTCTACCGGCCAGTGGGCGACACCGACAGCGAAGCGGCCTTCTGCGACTTGCTCAACCGCATCCGCAGCGCCTTCCCCGAACCGGTGCCGGT  <  NC_002947/5200748‑5200602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.