New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5200727	33 (1.500)	3 (0.140)	3/246	NT	8.9%	coding (324/774 nt)	yafJ	amidotransferase
	?	NC_002947	= 5200748	30 (1.420)					coding (303/774 nt)	yafJ	amidotransferase

CAGCAGCTGTTCCACCGGCACCGGTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAGCGCTGCACGAGGTTGGCCACTTC  >  NC_002947/5200589‑5200876                                                                                                                                           |                                                                                                                                                      cagcagCTGTTCCACCGGCACCGGTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGaa                                                                                                                                            <  1:196653/150‑1 (MQ=255)       gtccaacaccggcaccggTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCa                                                                                                                                      >  2:133651/7‑150 (MQ=255)              accggcaccggTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGcgg                                                                                                                               <  1:364803‑M2/150‑4 (MQ=255)                      cggTTCCGGGAAGGCGCTGGGGATGCGGTTGCGGAGTCCGTAGAAGACCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGcaactggtgcttcgcgcacaacggccagctgg                                                                                                                       <  2:429686‑M1/150‑33 (MQ=255)                           ccgggAAGGCGACGTGGATTCGGTTTAGCAAGTCGCAGAAGGGCGCTTCCCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTccc                                                                                                                  <  1:280191/148‑1 (MQ=255)                                         cGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGCAGCACCAGTTGCGGCCCCACAGTTCCCGCAGGAGCgggtgg                                                                                                    <  2:364491/150‑1 (MQ=255)                                         cGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACgggtgg                                                                                                    <  2:323863/150‑1 (MQ=255)                                                 gTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGa                                                                                            >  2:203788/1‑150 (MQ=255)                                                  ttGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGAc                                                                                           <  1:133651/150‑1 (MQ=255)                                                     aGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAgg                                                                                        <  1:203788/150‑1 (MQ=255)                                                      gCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCCCCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGc                                                                                       <  1:181347/150‑1 (MQ=255)                                                      gCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGc                                                                                       <  2:435544/150‑1 (MQ=255)                                                       cAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGca                                                                                      >  2:425550/1‑150 (MQ=255)                                                       cAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTACCAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGca                                                                                      <  1:546117/150‑1 (MQ=255)                                                                   ggCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGAc                                                                          >  1:406699/1‑150 (MQ=255)                                                                     ccGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGcaactggtgcttcgcgcacaacggccagctggg                                                                                                                      <  2:176104‑M1/104‑34 (MQ=255)                                                                     ccGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGcaactggtgcttcgcgcacaacggccagctggg                                                                                                                      >  1:176104‑M1/1‑71 (MQ=255)                                                                              tGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACGCTGCCGACGTTGGCCTGAc                                                               <  2:382024/150‑1 (MQ=255)                                                                                      tCGCCCACTGGCCGGTAGGAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGa                                                       <  2:293072/150‑1 (MQ=255)                                                                                        gCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGtt                                                                                                                                                     <  2:357709/54‑1 (MQ=255)                                                                                        gCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGtt                                                                                                                                                     >  1:357709/1‑54 (MQ=255)                                                                                        gCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACgggtgg                                                                                                    <  1:15921/103‑1 (MQ=255)                                                                                        gCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACgggtgg                                                                                                    >  2:15921/1‑103 (MQ=255)                                                                                        gCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAgg                                                                                        >  1:160870/1‑115 (MQ=255)                                                                                        gCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAgg                                                                                        <  2:160870/115‑1 (MQ=255)                                                                                            aCTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATc                                                 >  2:471103/1‑150 (MQ=255)                                                                                                gCCGGTAGAAACGGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCAACATTCCCCGCACGAACGGGTGGGTGGCCGACAGGCACACCCTGCCGACTTTGGCCTGACGGATATGACCGATcaccc                                             <  2:177594/150‑2 (MQ=255)                                                                                                        tctcTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACcacttcactt                                     <  1:122281/147‑1 (MQ=255)                                                                                                         aaCTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTTCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTg                                                                      <  1:153601/116‑1 (MQ=255)                                                                                                         aaCTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTg                                                                      >  2:153601/1‑116 (MQ=255)                                                                                                              gCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGtt                                                                                                                                   >  1:399695/1‑50 (MQ=255)                                                                                                              gCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGtt                                                                                                                                   <  2:399695/50‑1 (MQ=255)                                                                                                              gCCAGGCCCGTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATc                               <  1:25992/150‑1 (MQ=255)                                                                                                                      cTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAgcg                       >  2:448851/1‑150 (MQ=255)                                                                                                                       ttGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTg                                                                      >  1:445538/1‑102 (MQ=255)                                                                                                                       ttGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTg                                                                      <  2:445538/102‑1 (MQ=255)                                                                                                                        tGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGTCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAGCGCt                     <  2:406699/150‑1 (MQ=255)                                                                                                                             tCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAGCGCTGCACg                >  2:366943/1‑150 (MQ=255)                                                                                                                                cccAGCTGGCCGTTGTGCGCGAAGCACCAGTTGcggccagctgggtgacttcaagggcctggccagtttctaccggccagtgggcgacaccgacagcgaagcgg                                                           >  1:176104‑M2/1‑33 (MQ=255)                                                                                                                                cccAGCTGGCCGTTGTGCGCGAAGCACCAGTTGcggccagctgggtgacttcaagggcctggccagtttctaccggccagtgggcgacaccgacagcgaagcgg                                                           <  2:176104‑M2/104‑72 (MQ=255)                                                                                                                                 ccAGCTGGCCGTTGTGCGCGAAGCACCAGTTGcggccagctgggtgacttcaagggcctggccagtttctaccggccagtgggcgacaccgacagcgaagcggtcttctacggactccgcaaccgcatccccagcgccttcccggaaccg            <  2:429686‑M2/150‑119 (MQ=255)                                                                                                                                     cTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAGCGCTGCACGAGGTTGGc        <  1:425550/150‑1 (MQ=255)                                                                                                                                         ccGcaactggtgcttcgcgcacaacggccagctgggtgacttcaagggcctggccagtttctaccggccagtgggcgacaccgacagcgaagcggccttctgcgacttgctcaaccgcatccgcagcgccttccccgaaccggtgccggt    <  1:364803‑M1/150‑148 (MQ=255)                                                                                                                                           gTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAGCGCTGCACGAGGTTGGCCACTTc  <  1:506058/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                      CAGCAGCTGTTCCACCGGCACCGGTTCGGGGAAGGCGCTGCGGATGCGGTTGAGCAAGTCGCAGAAGGCCGCTTCGCTGTCGGTGTCGCCCACTGGCCGGTAGAAACTGGCCAGGCCCTTGAAGTCACCCAGCTGGCCGTTGTGCGCGAAGCACCAGTTGCGGCCCCACATTTCCCGCACGAACGGGTGGGTGTTGGACAGGCACACCCTGCCGACGTTGGCCTGACGGATATGACCGATCACCACTTCACTTTTGATCGGGTAGCGCTGCACGAGGTTGGCCACTTC  >  NC_002947/5200589‑5200876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.