New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5280943 =	26 (1.180)	4 (0.230)	4/206	NT	17.8%	intergenic (+28/+110)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
	?	NC_002947	5281029 =	16 (0.900)					intergenic (+114/+24)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha

TTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5281103‑5280943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGG  >  NC_002947/5281029‑5281166                                                                                                                                                                                                                                                                                                             TTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCC                                                                                                                                                       >  1:286284/1‑150  TTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCC                                                                                                                                                      <  2:286284/150‑1                                                                                              CCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTAC                                                          >  2:361905/1‑150                                                                                                  TCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATAT                                                                     >  1:224354/1‑135                                                                                                  TCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATAT                                                                     <  2:224354/135‑1                                                                                                                            GCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTG                            <  1:361905/150‑1                                                                                                                                          GAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCC                                                                                          >  1:44972/1‑74                                                                                                                                          GAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCC                                                                                          <  2:44972/74‑1                                                                                                                                                  TTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCC                                                <  1:62990/108‑1                                                                                                                                                  TTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCC                                                >  2:62990/1‑108                                                                                                                                                    GCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGC    <  1:305670/150‑1                                                                                                                                                      CCGCGAATGGGGAGGAGAGCGGGGCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCACCTTACCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGG  >  2:505106/1‑150                                                                                                                                                      CCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGG  >  2:399117/1‑150                                                                                                                                                            ATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCTGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCA             <  1:171491/133‑1                                                                                                                                                            ATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCTGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCA             >  2:171491/1‑133                                                                                                                                                                                                                                                                                                             TTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5281103‑5280943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGG  >  NC_002947/5281029‑5281166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.