New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5280943 =	26 (1.180)	4 (0.230)	4/206	NT	17.8%	intergenic (+28/+110)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
	?	NC_002947	5281029 =	16 (0.900)					intergenic (+114/+24)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha

CAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAAT  >  NC_002947/5280803‑5281091                                                                                                                                             |                                                                                                                                                     cAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGCTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTcgc                                                                                                                                             <  2:365957/150‑1 (MQ=255)  aGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTcgcg                                                                                                                                            <  1:421232/150‑1 (MQ=255)  aGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATAGGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTcgcg                                                                                                                                            <  2:198715/150‑1 (MQ=255)   ccgcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcaggggtaaggtgagaccgtcttcttcgacttctgaggtgaagcttggccccgctctcctCCCCATTCGCgg                                                                                                                                           >  2:505106‑M1/139‑150 (MQ=255)   ccgcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCgg                                                                                                                                           >  2:399117‑M1/139‑150 (MQ=255)     gcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGc                                                                                                                                         <  1:305670‑M1/14‑1 (MQ=255)              tgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatcagcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCAt                                                                                                                                                 <  1:171491‑M1/6‑1 (MQ=255)              tgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatcagcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCAt                                                                                                                                                 >  2:171491‑M1/128‑133 (MQ=255)                      aGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACAtt                                                                                                                        >  2:385517/1‑150 (MQ=255)                          cacccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATc                                                                                                                    <  2:540897/150‑1 (MQ=255)                          cacccaccGCACCGATGGCTGTGAAGTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGGTCGTTGTATTGCCGGGGCGGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATc                                                                                                                    <  2:270290/150‑1 (MQ=255)                             ccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATAAGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc                                                                                                                 >  1:7228/1‑150 (MQ=255)                             caagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc                                                                                                                 <  1:361905‑M1/38‑1 (MQ=255)                                        aGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACg                                                                                                      >  1:472416/1‑150 (MQ=255)                                                 ggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCaa                                                                                                                                       <  1:62990‑M1/16‑1 (MQ=255)                                                 ggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCaa                                                                                                                                       >  2:62990‑M1/93‑108 (MQ=255)                                                 cATTGTTTGACCAGTTCCCGTGTACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCGGACATTGATCGGCGTCGGTGGACGAAGATCGtt                                                                                             <  2:291869/150‑1 (MQ=255)                                                 cATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt                                                                                             <  2:472416/150‑1 (MQ=255)                                                  aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc                                                                                                                 <  1:256354/129‑1 (MQ=255)                                                  aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGc                                                                                                                 >  2:256354/1‑129 (MQ=255)                                                          aCCAGTTACCGTATACCCAACATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCg                                                                                    >  1:88879/1‑150 (MQ=255)                                                           gtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg                                                                                   >  2:361905‑M1/83‑150 (MQ=255)                                                                     tataCCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt                                                                                             <  2:236511/130‑1 (MQ=255)                                                                     tataCCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt                                                                                             >  1:236511/1‑130 (MQ=255)                                                                      atatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGa                                                                                       >  1:224354‑M1/72‑135 (MQ=255)                                                                      atatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGa                                                                                       <  2:224354‑M1/64‑1 (MQ=255)                                                                                    gagaGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg                                                                                         <  2:414298/119‑1 (MQ=255)                                                                                    gagaGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg                                                                                         >  1:414298/1‑119 (MQ=255)                                                                                           gggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTc                                                                                                                               >  1:44972‑M1/51‑74 (MQ=255)                                                                                           gggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTc                                                                                                                               <  2:44972‑M1/24‑1 (MQ=255)                                                                                           gggTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGcccc                                                   >  2:89105/1‑150 (MQ=255)                                                                                                ctgctgGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCt                                              <  1:89105/150‑1 (MQ=255)                                                                                                             gcTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGt                                 <  2:88879/150‑1 (MQ=255)                                                                                                                     ttGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCaga                                                           >  2:295853/1‑116 (MQ=255)                                                                                                                     ttGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCaga                                                           <  1:295853/116‑1 (MQ=255)                                                                                                                     ttGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGaagaag                         >  2:259667/1‑150 (MQ=255)                                                                                                                        tATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACg                      <  1:386139/150‑1 (MQ=255)                                                                                                                             ccGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGtctc                 <  2:7228/150‑1 (MQ=255)                                                                                                                                 ggCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCTAGGCATAAGTCGAAGAAGACGGTCTCCCCt             <  1:385517/150‑1 (MQ=39)                                                                                                                                            aGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAAt  >  2:294398/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                     CAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAAT  >  NC_002947/5280803‑5281091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.