| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4094693 | 12 (0.540) | 7 (0.350) | 7/232 | NT | 39.0% | intergenic (+65/+70) | PP_3602/PP_3603 | 2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator |
| ? | NC_002947 | = 4094738 | 11 (0.550) | intergenic (+110/+25) | PP_3602/PP_3603 | 2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator | |||||
CCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCA > NC_002947/4094551‑4094842 | tcTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACAGTACTGGCCTTTTcgcg > 1:436743/2‑150 (MQ=255) gcgACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCtt > 1:186972/1‑150 (MQ=255) cgACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAACGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTc < 2:406362/150‑1 (MQ=255) aaCCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTtttaccgggcaagatagccctgtcgacg > 2:277029‑M1/1‑122 (MQ=255) gCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGccc < 1:376412/150‑1 (MQ=255) tGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTtttcgcgggcaagatagccctgtcgaagcgggcttgcccgc < 1:277029‑M1/150‑42 (MQ=255) cggTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaa < 1:527859‑M1/150‑47 (MQ=255) cGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa > 1:345883‑M2/1‑149 (MQ=255) ggTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGag > 2:435430‑M2/1‑148 (MQ=255) ttGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACAGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggc > 2:436743‑M2/1‑146 (MQ=255) gTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCgg < 2:470197/106‑1 (MQ=255) gTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCgg > 1:470197/1‑106 (MQ=255) cGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacag > 2:186972‑M2/1‑138 (MQ=255) ttGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTTCTTGCGCTTCAg < 1:36893/150‑1 (MQ=255) gAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaag > 1:332056‑M1/1‑55 (MQ=255) gAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaag < 2:332056‑M1/102‑48 (MQ=255) aaaCAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggcca < 1:13036‑M1/105‑52 (MQ=255) aaaCAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggcca > 2:13036‑M1/1‑54 (MQ=255) aGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCCTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTg > 1:522396/1‑150 (MQ=255) ttttcttttTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGATAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGt > 1:500870/1‑150 (MQ=255) ttcttttTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa > 2:41518‑M2/1‑68 (MQ=255) ttcttttTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa < 1:41518‑M2/69‑2 (MQ=255) ttttGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTTAg < 1:562695/150‑1 (MQ=255) gACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGAAAGCGCTCGCGGCTGTTGCTCAGGTGc < 1:199273/150‑1 (MQ=255) cTGTACTGGCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccg > 2:186972‑M1/1‑12 (MQ=255) cTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCAt > 1:470595/1‑150 (MQ=255) tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgttt > 2:13036‑M2/1‑51 (MQ=255) tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgttt < 1:13036‑M2/105‑55 (MQ=255) gCCTcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggccagtactgtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaa > 2:436743‑M1/1‑4 (MQ=255) gCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATgg > 2:421740/1‑150 (MQ=255) ctcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaacc > 2:435430‑M1/1‑2 (MQ=255) cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttc < 2:332056‑M2/102‑56 (MQ=255) cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttc > 1:332056‑M2/1‑47 (MQ=255) ttttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccg < 1:527859‑M2/150‑105 (MQ=255) ttttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCa > 1:381612/1‑150 (MQ=255) tcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccg > 1:345883‑M1/1‑1 (MQ=255) tcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggccagtacagtcaaaaaagaa > 2:41518‑M1/1‑1 (MQ=255) tcttcgcgggcaagatagccctgtcgaagcgggcttgcccgcgaaaaggccagtacagtcaaaaaagaa < 1:41518‑M1/69‑69 (MQ=255) | CCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCA > NC_002947/4094551‑4094842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |