| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4094693 | 12 (0.540) | 7 (0.350) | 7/232 | NT | 39.0% | intergenic (+65/+70) | PP_3602/PP_3603 | 2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator |
| ? | NC_002947 | = 4094738 | 11 (0.550) | intergenic (+110/+25) | PP_3602/PP_3603 | 2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator | |||||
CGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGT > NC_002947/4094590‑4094860 | cGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa > 1:345883‑M2/1‑149 (MQ=255) ggTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGag > 2:435430‑M2/1‑148 (MQ=255) ttGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACAGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggc > 2:436743‑M2/1‑146 (MQ=255) cGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacag > 2:186972‑M2/1‑138 (MQ=255) ttGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTTCTTGCGCTTCAg < 1:36893/150‑1 (MQ=255) aGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCCTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTg > 1:522396/1‑150 (MQ=255) ttttcttttTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGATAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGt > 1:500870/1‑150 (MQ=255) ttcttttTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa > 2:41518‑M2/1‑68 (MQ=255) ttcttttTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGa < 1:41518‑M2/69‑2 (MQ=255) ttttGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTTAg < 1:562695/150‑1 (MQ=255) gACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGAAAGCGCTCGCGGCTGTTGCTCAGGTGc < 1:199273/150‑1 (MQ=255) cTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCAt > 1:470595/1‑150 (MQ=255) tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgttt > 2:13036‑M2/1‑51 (MQ=255) tGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgttt < 1:13036‑M2/105‑55 (MQ=255) gCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATgg > 2:421740/1‑150 (MQ=255) cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttc < 2:332056‑M2/102‑56 (MQ=255) cTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttc > 1:332056‑M2/1‑47 (MQ=255) ttttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccg < 1:527859‑M2/150‑105 (MQ=255) ttttCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCa > 1:381612/1‑150 (MQ=255) gcgGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAAaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccgccgca < 1:277029‑M2/150‑110 (MQ=255) cAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGcccc > 2:156370/1‑150 (MQ=255) cgtcgACAGGGCTATCTTGCCCGGTAAAaggccagtacagtcaaaaaagaaaagccccgccgtgcgcagggctttcctgtttctggcaaccagtcagatcgccccgtcactccactgaccgttcaccaaccgccgcagccccagcgggtt > 2:277029‑M2/3‑28 (MQ=255) gCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATgg > 1:386749/1‑119 (MQ=255) gCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATgg < 2:386749/119‑1 (MQ=255) | CGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGCCCGCTTCGACAGGGCTATCTTGCCCGCGAAGAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGT > NC_002947/4094590‑4094860 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |