New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 587034530 (0.760)11 (0.360) 11/208 2.0 31.2% intergenic (+50/+84) PP_5144/ptsP hypothetical protein/phosphoenolpyruvate‑dependent regulator
?NC_002947 = 5870380 25 (0.810)intergenic (+85/+49) PP_5144/ptsP hypothetical protein/phosphoenolpyruvate‑dependent regulator

AGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5870170‑5870345
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtgaacccgctcctacCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCG  <  NC_002947/5870380‑5870242
                                                                                                                                                                                                                                                                                                                           
AGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGC                                                                                                                                                                       <  1:324418/150‑1
   CAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTC                                                                                                                                                                    >  2:974194/1‑150
   CAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTC                                                                                                                                                                    >  1:255311/1‑150
           CGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGCGCAGGGGCAAACGCGGCTGGTTGAGCGCAGTTTCTGGCCTTTTGGCGGGCATTTGGGGGAGATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGG                                                                                                                                                            <  1:6576/150‑1
                       GAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCC                                                                                                                                                <  2:255311/150‑1
                               TGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCC                                                                                                                                                                      <  2:234726/120‑1
                               TGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCC                                                                                                                                                                      >  1:234726/1‑120
                                           ATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGG                                                                                                                                                             <  2:665125/117‑1
                                           ATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGG                                                                                                                                                             >  1:665125/1‑117
                                                   GGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGAC                                                                                                                    >  2:831352/1‑150
                                                    GGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTTGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACC                                                                                                                   >  2:131021/1‑150
                                                      CAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCT                                                                                                                                               >  1:554641/1‑120
                                                      CAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCT                                                                                                                                               <  2:554641/120‑1
                                                               CTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGT                                                                                                        >  1:676554/1‑150
                                                                     GAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGC                                                                                                  <  1:831352/150‑1
                                                                       GCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGG                                                                                                <  1:1299/150‑1
                                                                         GCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGT                                                                                              <  2:676554/150‑1
                                                                               TCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTTGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCC                                                                                        <  1:131021/150‑1
                                                                                                                                 TTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAA                                                                                   >  2:190960/1‑105
                                                                                                                                 TTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAA                                                                                   <  1:190960/105‑1
                                                                                                                                    GATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTG                                                                                                         >  2:23973/1‑80
                                                                                                                                    GATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTG                                                                                                         <  1:23973/80‑1
                                                                                                                                                    GCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAG                                                    >  1:792733/1‑117
                                                                                                                                                    GCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAG                                                    <  2:792733/117‑1
                                                                                                                                                       TCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAAC                                              <  2:48681/120‑1
                                                                                                                                                       TCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAAC                                              >  1:48681/1‑120
                                                                                                                                                        cgTCGCGGGTGACCCCGGTCCTACCCCGCACACACATCTGGGGTTGGCACCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAG               <  2:669688/148‑1
                                                                                                                                                           CGCGGGTGAACCCGCCCCCACCACGTACACACATCTGGGGTTGGCCCCAGGCCGTTGTAGGAGCGGGTGCACCCGCGAAGAGGCCTGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCC            <  2:576619/150‑1
                                                                                                                                                              GGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGA         >  2:668442/1‑150
                                                                                                                                                              GGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAG                                                                                                      >  2:256314/1‑57
                                                                                                                                                              GGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAG                                                                                                      <  1:256314/57‑1
                                                                                                                                                                GTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAA       <  2:821050/150‑1
                                                                                                                                                                  tagCCCGCTCCTACCACGTACCCACCTCTGGGGTCGCGCCAAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACT     <  2:895156/147‑1
                                                                                                                                                                     CCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCG  >  1:834812/1‑150
                                                                                                                                                                                                                                                                                                                           
AGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5870170‑5870345
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtgaacccgctcctacCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCG  <  NC_002947/5870380‑5870242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.