New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5112607 =	33 (1.070)	7 (0.270)	6/226	2.4	25.2%	intergenic (‑148/+118)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	5112712 =	14 (0.540)					intergenic (‑253/+13)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein

ATCTGGGCACCTCCCGGTGTAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCT  >  NC_002947/5112458‑5112747                                                                                                                                                      |                                                                                                                                             aTCTGGGCACCTCCCGGTGTAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCttt                                                                                                                                              <  2:371952/150‑1 (MQ=255) aTCTGGGCACCTCCCGGTGTAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCttt                                                                                                                                              >  1:511842/1‑150 (MQ=255) aTCTGGGCACCTCCCGGTGTAGGAATGAAAACAGGTTTCTGGCGACGAACGCGACAAAAAGCCGCGCATCCTATTCAGTGTATTTTGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCttt                                                                                                                                              >  1:466205/1‑150 (MQ=255)          gaccagcttccgtagcctgttggtggagctggatgccatggaagacggtttgaaaaccgattttgatgatctgcggggagaggagcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGcc                                                                                                                                     <  1:363690‑M1/10‑1 (MQ=255)            tCCCGGTGTAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCctc                                                                                                                                   <  1:453830/150‑1 (MQ=255)              agcttccgtagcctgttggtggagctggatgccatggaagacggtttgaaaaccgattttgatgatctgcggggagaggagcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGCCTCtt                                                                                                                                 <  1:678912‑M1/14‑1 (MQ=255)                 gtgtAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTg                                                                                                                                        <  2:264464/140‑1 (MQ=255)                 gtgtAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTg                                                                                                                                        >  1:264464/1‑140 (MQ=255)                   gtAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCgg                                                                                                                            <  2:96988/150‑1 (MQ=255)                       gAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCAAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCAc                                                                                                                        >  1:702994/1‑150 (MQ=255)                              tggtggagctggatgccatggaagacggtttgaaaaccgattttgatgatctgcggggagaggagcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCACGCCCGCt                                                                                                                 <  1:103792‑M1/30‑1 (MQ=255)                                cAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCGTGCCCGcgaa                                                                                                               <  1:112870/150‑4 (MQ=255)                                    tttCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCCGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACa                                                                                                           <  2:511842/150‑1 (MQ=255)                                          gCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTcg                                                                                                     >  2:328298/1‑150 (MQ=255)                                           cgacgaACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTcgc                                                                                                    <  1:456261/150‑1 (MQ=255)                                           cgacgaACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTcgc                                                                                                    <  1:1246/150‑1 (MQ=255)                                                           aGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCt                                                                                    <  2:286098/150‑1 (MQ=255)                                                             gaaaaccgattttgatgatctgcggggagaggagcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCtgt                                                                                  <  1:335‑M1/61‑1 (MQ=255)                                                             gCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCAAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCtgt                                                                                  <  2:702994/150‑1 (MQ=255)                                                              ccGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCtgtg                                                                                 <  2:731379/150‑1 (MQ=255)                                                                         aCGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCtgtg                                                                      <  1:328298/150‑1 (MQ=255)                                                                           gcgGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCAGCTATTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTggg                                                                    <  1:173904/150‑1 (MQ=255)                                                                                   tcaGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCtt                                                                                            <  1:123712/118‑1 (MQ=255)                                                                                   tcaGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCtt                                                                                            >  2:123712/1‑118 (MQ=255)                                                                                        ggAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTATTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGccc                                                       <  2:707933/150‑1 (MQ=255)                                                                                          aggagcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTTCATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCcgc                                                     >  2:335‑M1/61‑150 (MQ=255)                                                                                            gagcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGa                                                   >  2:103792‑M1/59‑150 (MQ=255)                                                                                             gCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGaa                                                  <  1:112340/150‑1 (MQ=255)                                                                                             gCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCAAGCCcgctcc                                                  <  2:466205/150‑4 (MQ=255)                                                                                              gcctgagcctccggtggaggaggagatcaaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCTTGCccgcgaa                                                                                                               <  2:573440‑M1/32‑4 (MQ=255)                                                                                               aCTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCtt                                                                                                                                 <  2:344672/69‑1 (MQ=255)                                                                                               aCTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCtt                                                                                                                                 >  1:344672/1‑69 (MQ=255)                                                                                                   gAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGTTCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGcc                                            <  1:646142/150‑1 (MQ=255)                                                                                                        tAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGcac                                       >  1:204433/1‑150 (MQ=255)                                                                                                          gagGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCcgc                                                     <  1:727557/134‑1 (MQ=255)                                                                                                          gagGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCcgc                                                     >  2:727557/1‑134 (MQ=255)                                                                                                           agGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAgg                                    <  2:265693/150‑1 (MQ=255)                                                                                                                         caaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCtt                                                           <  1:115071‑M1/84‑1 (MQ=255)                                                                                                                         caaggctcagccctgattgatctgctgccTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCtt                                                           >  2:115071‑M1/30‑113 (MQ=255)                                                                                                                              cATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGc                                                                 >  1:695739/1‑102 (MQ=255)                                                                                                                              cATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGc                                                                 <  2:695739/102‑1 (MQ=255)                                                                                                                                             aaagggCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCAAAGGCAGCAGATCAATCAGGGCTGAGCCTTGATctccc  >  1:25834/4‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                             ATCTGGGCACCTCCCGGTGTAGGAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCT  >  NC_002947/5112458‑5112747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.