New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6027949 =	37 (1.200)	8 (0.310)	6/228	2.5	24.5%	intergenic (‑37/+74)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	6028006 =	18 (0.690)					intergenic (‑94/+17)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

TGCCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCC  >  NC_002947/6027801‑6028091                                                                                                                                                      |                                                                                                                                               tGCCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGc                                                                                                                                               <  1:628213/150‑1 (MQ=255)   ccGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGTCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCgg                                                                                                                                             <  1:345660/150‑1 (MQ=255)      ccagtacgatggtggcgacatgaccgcgccgttcggtggcttcaaacagtcgggcaacggccgtgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGc                                                                                                                                           <  2:449745‑M1/6‑1 (MQ=255)        agtacgatggtggcgacatgaccgcgccgttcggtggcttcaaacagtcgggcaacggccgtgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCaa                                                                                                                                         >  1:261727‑M1/143‑150 (MQ=255)          cccAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAg                                                                                                                                        <  1:246847/148‑1 (MQ=255)          cccAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAg                                                                                                                                        >  2:246847/1‑148 (MQ=255)           ccAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGccc                                                                                                                                     >  1:687180/1‑150 (MQ=255)             ggcacTCCAGGCGGATGAACACCACCTGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCA‑AGATTCGTATGACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGc                                                                                                                                   <  1:235960/146‑1 (MQ=255)                ccTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTcc                                                                                                                                <  2:195668/150‑1 (MQ=255)                     aGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCaa                                                                                                                           >  1:103704/1‑150 (MQ=255)                      gggcgaGGGACACGAGGGGCATGCTGACGCAAAACGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGACCGCTCCTGCAAc                                                                                                                          <  2:273128/145‑1 (MQ=255)                         gcAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCACGCACGCCCCTCCAACGGt                                                                                                                       >  2:357463/1‑150 (MQ=255)                         gcAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGt                                                                                                                       >  2:356212/1‑150 (MQ=255)                            gggACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTcgc                                                                                                                    >  1:544052/1‑150 (MQ=255)                            gggACAACAGCGGCATGCTCACGCCAAGCGCAAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAATGCATTACAGCCTCCCTGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTcgc                                                                                                                    <  2:180028/150‑1 (MQ=255)                               acacCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGaa                                                                                                                 <  1:661021/150‑1 (MQ=255)                               acacCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGaa                                                                                                                 <  2:424844/150‑1 (MQ=255)                                        gCATGCTCACGCCAAGCGCCAGCCCGACCCTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAg                                                                                                        <  2:687180/150‑1 (MQ=255)                                               cACGCCAAGCGCCAGCCCGACCCTGGGCACCGAGCC‑CCATACTGCCAAGTAGGTCCCCCCACGCATTAAAGCCCCACACCCGTTCTTTCAAGGGGCCCATCTGCGGGCAAGCCCGCTCCCGCAACGGTCGCCAAGACCTGCAGGTGCggg                                                                                                 <  2:92536/150‑1 (MQ=255)                                                 cGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCt                                                                                               >  2:251698/1‑150 (MQ=255)                                                 aaacagtcgggcaacggccgtgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGc                                                                                                >  1:449745‑M1/102‑150 (MQ=255)                                                    cAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGc                                                                                            >  2:222224/1‑150 (MQ=255)                                                        cgcCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCcgc                                                                                        <  2:103704/150‑1 (MQ=255)                                                              ccagACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAg                                                                                  <  1:639848/147‑1 (MQ=255)                                                                     tgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCggg                                                                                                 >  2:411464‑M1/82‑129 (MQ=255)                                                                     tgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCggg                                                                                                 <  1:411464‑M1/48‑1 (MQ=255)                                                                              gctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCggg                                                                                                 >  1:724704‑M1/73‑120 (MQ=255)                                                                              gctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCggg                                                                                                 <  2:724704‑M1/48‑1 (MQ=255)                                                                                    cAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTg                                                             <  1:356212/150‑1 (MQ=255)                                                                                      gTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCGGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGAt                                                           <  2:305047/150‑1 (MQ=255)                                                                                         tggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCg                                                                                                   >  1:753146‑M1/62‑107 (MQ=255)                                                                                         tggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCg                                                                                                   <  2:753146‑M1/46‑1 (MQ=255)                                                                                                gTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCAGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGcc                                                 >  1:152444/1‑150 (MQ=255)                                                                                                   ggTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTc                                              >  2:124087/1‑150 (MQ=255)                                                                                                          cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGTCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCgg                                       >  1:548319/1‑150 (MQ=255)                                                                                                              gCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTa                                   <  1:222224/150‑1 (MQ=255)                                                                                                               cATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCAGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTAc                                  <  2:152444/150‑1 (MQ=255)                                                                                                                    cacccTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTtctc                             <  2:392840/147‑1 (MQ=255)                                                                                                                     aGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCAGCGAAAAGGACCTACCGGGTTACAGCTTGATGCAGGTCGCCTTCAGCTCGGGGTACTTCTcc                            >  1:366667/1‑150 (MQ=255)                                                                                                                      gCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCa                           <  1:124087/150‑1 (MQ=255)                                                                                                                           ccAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTAc                                                                   <  2:70664/105‑1 (MQ=255)                                                                                                                           ccAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTAc                                                                   >  1:70664/1‑105 (MQ=255)                                                                                                                               ccAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCATTCAGCTCGGTGTACTTCTCCAGTGCGTGCa                  >  2:690771/1‑150 (MQ=255)                                                                                                                                    atTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCCCGGTGTACTTCTCCAGTGCGTGCAGCGAc             <  2:544052/150‑1 (MQ=255)                                                                                                                                         cAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGAc             >  2:366016/1‑145 (MQ=255)                                                                                                                                         cAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGAc             <  1:366016/145‑1 (MQ=255)                                                                                                                                               cctttttGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGcc  <  1:504637‑M1/143‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                               TGCCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGC‑CAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCC  >  NC_002947/6027801‑6028091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.