| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1223233 = | 20 (0.710) | 4 (0.160) | 4/218 | NT | 18.3% | intergenic (‑18/+48) | PP_1067/gltL | sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein |
| ? | NC_002947 | 1223273 = | 18 (0.720) | intergenic (‑58/+8) | PP_1067/gltL | sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein | |||||
TTCCGCTGCCAGGGACCCACCAGGCAGCGGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1223268‑1223233‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcggaagctgTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTCCTTGGTGCAGTCTTCGATGATGCTGCCCTTGTCCATGAAGATGACCCGGTTGGCGACTTTGCGG > NC_002947/1223273‑1223419 TTCCGCTGCCAGGGACCCACCAGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCT < 1:194418/100‑1TTCCGCTGCCAGGGACCCACCAGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCT > 2:194418/1‑100 GCTGCCAGGGACCCACCAGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATC < 1:504934/56‑1 GCTGCCAGGGACCCACCAGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATC > 2:504934/1‑56 CTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTCCTTGGTGCAGTCTTCGATGATGCTGCCCTTGTCCATGAAGATGACCCGGTTGGCGACTTTGCGG < 2:425708/150‑1 TTCCGCTGCCAGGGACCCACCAGGCAGCGGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1223268‑1223233‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcggaagctgTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTCCTTGGTGCAGTCTTCGATGATGCTGCCCTTGTCCATGAAGATGACCCGGTTGGCGACTTTGCGG > NC_002947/1223273‑1223419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |