| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1223233 = | 20 (0.710) | 4 (0.160) | 4/218 | NT | 18.3% | intergenic (‑18/+48) | PP_1067/gltL | sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein |
| ? | NC_002947 | 1223273 = | 18 (0.720) | intergenic (‑58/+8) | PP_1067/gltL | sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein | |||||
TCAGGTAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTCCTTGGTGCAGTCTTCGATGATG > NC_002947/1223086‑1223377 | ccgcaaagtcgccaaccgggtcatcttcatggacaagggcagcatcatcgaagactgcaccaaggaagagttcttcggtgaccagagcgcccgcgaccagcgcacccagcacctcctcagcaagatcctgcagcactgacccggccaCAg < 2:425708‑M1/3‑1 (MQ=255) gTAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTc > 1:443267/1‑150 (MQ=255) tAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTcc < 1:117102/150‑1 (MQ=255) ccAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTggg > 1:457218/1‑150 (MQ=255) ggCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTcc > 1:595368/1‑150 (MQ=255) ggtAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGt < 1:416878/150‑1 (MQ=255) gCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAg < 1:72304/150‑1 (MQ=255) cGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGtgctg < 1:345895/130‑1 (MQ=255) cGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGtgctg > 2:345895/1‑130 (MQ=255) aaTTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTg < 2:595368/150‑1 (MQ=255) aTTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTgg > 2:444961/1‑150 (MQ=255) agagcgcccgcgaccagcgcacccagcacctcctcagcaagatcctgcagcactgacccggccaCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGaa > 2:194418‑M1/65‑100 (MQ=255) agagcgcccgcgaccagcgcacccagcacctcctcagcaagatcctgcagcactgacccggccaCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGaa < 1:194418‑M1/36‑1 (MQ=255) aCGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGGCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTgc > 1:425708/1‑150 (MQ=255) ttGGCAGGGCGAAGTAGCGAGGGATAGGAGCTCATCACAGTGTCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTcgc > 1:395722/1‑150 (MQ=255) ggCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCATTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCgg < 1:689503/150‑1 (MQ=255) gggCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGc > 2:641073/1‑81 (MQ=255) gggCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGc < 1:641073/81‑1 (MQ=255) gATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAg < 2:674986/85‑1 (MQ=255) gATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAg > 1:674986/1‑85 (MQ=255) gATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCgaagaa < 1:444961/150‑1 (MQ=255) gCATTTCATCACAGTGTCCTTGTTACGACCAGCTTCCGCTGCCTAGTCGCTATCTGACAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAActct < 2:395722/150‑1 (MQ=255) tttCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTcc > 1:399639/1‑150 (MQ=255) gatcctgcagcactgacccggccaCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGc > 2:504934‑M1/25‑56 (MQ=255) gatcctgcagcactgacccggccaCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGc < 1:504934‑M1/32‑1 (MQ=255) aCGACCAGCGTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTCCTTGGTGCAGTCTTCGatgatg < 2:457218/150‑1 (MQ=255) | TCAGGTAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGTGGCCGGGTCAGTGCTGCAGGATCTTGCTGAGGAGGTGCTGGGTGCGCTGGTCGCGGGCGCTCTGGTCACCGAAGAACTCTTCCTTGGTGCAGTCTTCGATGATG > NC_002947/1223086‑1223377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |