| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1570468 | 6 (0.210) | 5 (0.230) | 5/194 | NT | 33.6% | intergenic (+34/‑154) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | = 1570494 | 15 (0.680) | intergenic (+60/‑128) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1570296‑1570468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggggaagcccgctccCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCT < NC_002947/1570494‑1570352 CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC < 2:667278/150‑1CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTAATGTGCTCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC < 1:531877/150‑1 CCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG > 2:70324/1‑121 CCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG < 1:70324/121‑1 AGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG < 1:166216/150‑1 AAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGG < 1:194889/88‑1 AAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGG > 2:194889/1‑88 CTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG > 1:425182/1‑90 CTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG < 2:425182/90‑1 ATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG < 1:275591/119‑1 ATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG > 2:275591/1‑119 GTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGC < 2:90160/114‑1 GTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGC > 1:90160/1‑114 CCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAG < 2:107678/60‑1 CCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAG > 1:107678/1‑60 CCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTCCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGG < 2:165367/118‑1 CCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTCCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGG > 1:165367/1‑118 TCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGC > 2:70643/1‑150 TTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCCGGCCCTTGCGA > 1:162306/1‑150 GAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGC > 2:574675/1‑82 GAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGC < 1:574675/82‑1 AAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTC > 2:371877/1‑150 CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCT > 2:432149/1‑150 CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1570296‑1570468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggggaagcccgctccCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCT < NC_002947/1570494‑1570352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |