| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1570468 | 6 (0.210) | 5 (0.230) | 5/194 | NT | 33.6% | intergenic (+34/‑154) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | = 1570494 | 15 (0.680) | intergenic (+60/‑128) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
AGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTA > NC_002947/1570352‑1570635 | agaagaGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgg > 2:432149‑M2/1‑143 (MQ=255) gagTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggctt > 2:371877‑M2/1‑139 (MQ=255) tCGCAAGGGCCGGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaa > 1:162306‑M2/1‑130 (MQ=255) gCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaaga > 2:70643‑M2/1‑128 (MQ=255) ccAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagagg < 2:165367‑M2/118‑25 (MQ=255) ccAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagagg > 1:165367‑M2/1‑94 (MQ=255) aaGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGcc < 1:677634/150‑1 (MQ=255) gTCTGGCGTTGGTCATCTAGCGGGTTTGACCTGTACCGGCCTCATCTCTGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGa < 1:645496/150‑1 (MQ=255) tCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAgtgt < 2:480346/150‑1 (MQ=255) gCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttc < 1:574675‑M2/82‑13 (MQ=255) gCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttc > 2:574675‑M2/1‑70 (MQ=255) tGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCt > 1:128113/1‑150 (MQ=255) ttCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTG‑GATC‑CCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCGTCTCCTGTGAGACATAAGGCCGATTGCCAGACCGATAGCGGAACGATTGTGTTACTAGGTATGTTTAGAACTGCGTAg > 2:320040/1‑150 (MQ=9) cccGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacat < 1:275591‑M2/119‑86 (MQ=255) cccGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacat > 2:275591‑M2/1‑34 (MQ=255) ccGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacatggtcgccaggcccttgcgaccgccactcttct < 1:166216‑M2/150‑118 (MQ=255) gCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacac < 2:90160‑M2/114‑84 (MQ=255) gCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacac > 1:90160‑M2/1‑31 (MQ=255) cAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAg > 2:329530/1‑141 (MQ=255) cAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAg < 1:329530/141‑1 (MQ=255) a‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGTAGTAAACCCGTCATGa > 1:110659/1‑150 (MQ=255) tCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGAc < 2:128113/150‑1 (MQ=255) ccACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACAt < 1:472313/58‑1 (MQ=255) ccACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACAt > 2:472313/1‑58 (MQ=255) aCGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTc > 2:748156/1‑150 (MQ=255) aaTCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGa > 1:720269/1‑79 (MQ=255) aaTCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGa < 2:720269/79‑1 (MQ=255) tCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTa > 1:384630/1‑150 (MQ=255) cTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGc < 2:290210/58‑1 (MQ=255) cTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGc > 1:290210/1‑58 (MQ=255) | AGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGG‑GA‑TCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTA > NC_002947/1570352‑1570635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |