New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2295553	20 (0.710)	3 (0.110)	3/236	NT	12.2%	intergenic (+55/‑68)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	= 2295606	24 (0.890)					intergenic (+108/‑15)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein

TCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2295475‑2295553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGGGTGCATCCTGCTT  <  NC_002947/2295606‑2295460                                                                                                                                                                                                                                    TCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCATTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAA                                                                              <  2:119701/150‑1                             GATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCC                                                                                               >  2:728159/1‑105                             GATCAGCGTGATAATCGGTACTGCTCCAATGAATTTTTGCGTGCGGCCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCC                                                                                               <  1:728159/105‑1                                                                             TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGGGTGCATCCTGCTT  <  1:214795/150‑1                                                                             TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGG               <  1:639018/137‑1                                                                             TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGG               >  2:639018/1‑137                                                                                                                                                                                                                                    TCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2295475‑2295553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGGGTGCATCCTGCTT  <  NC_002947/2295606‑2295460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.