New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2295553	20 (0.710)	3 (0.110)	3/236	NT	12.2%	intergenic (+55/‑68)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	= 2295606	24 (0.890)					intergenic (+108/‑15)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein

AAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTG  >  NC_002947/2295460‑2295746                                                                                                                                                   |                                                                                                                                             aaGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga                                                                                                                                           <  1:214795‑M2/150‑4 (MQ=255)          gCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGccc                                                                                                                                  <  2:413349/150‑1 (MQ=255)              ccTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga                                                                                                                                           <  1:639018‑M2/137‑4 (MQ=255)              ccTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga                                                                                                                                           >  2:639018‑M2/1‑134 (MQ=255)                  ggACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAAc                                                                                                                          >  2:632051/1‑150 (MQ=255)                                              tCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAGTCTCTTCCCGGTTATTGCCGCAt                                                                                              >  2:670759/1‑150 (MQ=255)                                                       tAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAGGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCAttt                                                                                     >  1:302409/1‑150 (MQ=255)                                                               aCTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCg                                                                             <  1:632051/150‑1 (MQ=255)                                                                ctgctgCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCgg                                                                            <  2:411754/150‑1 (MQ=255)                                                                    tgcAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGt                                                                        >  1:570669/1‑150 (MQ=255)                                                                    tgcAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGt                                                                        >  2:253668/1‑150 (MQ=255)                                                                       aaTGAATTTTTGCGTGCGGCCTCGGCGGCATAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTCCt                                                                     <  1:750129/150‑1 (MQ=255)                                                                        aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtctc                                                                                                                 <  1:344324/105‑1 (MQ=255)                                                                        aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtctc                                                                                                                 >  2:344324/1‑105 (MQ=255)                                                                        aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATc                                                                                             >  2:70819/1‑125 (MQ=255)                                                                        aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATc                                                                                             <  1:70819/125‑1 (MQ=255)                                                                             tttttGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAATGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccga                                                               <  2:119701‑M2/150‑80 (MQ=255)                                                                             tttttGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAgc                                                               <  2:8683/150‑1 (MQ=255)                                                                                    gtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACAACCGTCGAGGTAACGACAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcc                                                        >  1:467271/1‑150 (MQ=255)                                                                                              ggcggcGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattggagcagtaccgattatcacgctgatc                                                                                           <  1:728159‑M2/105‑52 (MQ=255)                                                                                              ggcggcGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatc                                                                                           >  2:728159‑M2/1‑54 (MQ=255)                                                                                               gcggcgTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGAcag                                             <  1:627511/150‑1 (MQ=255)                                                                                                  gcgTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGAcagcag                                          >  2:3326/1‑150 (MQ=255)                                                                                                     tAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCaa                                       <  1:3326/150‑1 (MQ=255)                                                                                                       aGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGACCTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATACCGACAGCAGCAAgg                                     <  2:214795/150‑1 (MQ=255)                                                                                                             aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt                                                                                                                    >  2:397016/1‑65 (MQ=255)                                                                                                             aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt                                                                                                                    <  1:397016/65‑1 (MQ=255)                                                                                                               ccAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGcc                                                                  >  1:654750/1‑113 (MQ=255)                                                                                                               ccAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGcc                                                                  <  2:654750/113‑1 (MQ=255)                                                                                                                                          ccaccGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTg  >  2:684795/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                             AAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTG  >  NC_002947/2295460‑2295746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.