New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5509745	36 (1.280)	3 (0.120)	3/224	NT	8.0%	intergenic (+36/‑105)	urtA/urtB	urea ABC transporter substrate‑binding protein/urea ABC transporter permease
	?	NC_002947	= 5509807	36 (1.400)					intergenic (+98/‑43)	urtA/urtB	urea ABC transporter substrate‑binding protein/urea ABC transporter permease

AGGATGACGGCCAGTTCAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5509591‑5509745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtgaGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCC  <  NC_002947/5509807‑5509740                                                                                                                                                                                                                                 AGGATGACGGCCAGTTCAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCG                                                                           >  1:253943/1‑150                                                         CCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTC                                                                              <  1:588831/91‑1                                                         CCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTC                                                                              >  2:588831/1‑91                                                                          TCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCC  <  1:325258/150‑1                                                                                                      GCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGG         <  1:44951/115‑1                                                                                                      GCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGG         >  2:44951/1‑115                                                                                                                                                                                                                                 AGGATGACGGCCAGTTCAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5509591‑5509745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtgaGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCC  <  NC_002947/5509807‑5509740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.