New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5509745	36 (1.280)	3 (0.120)	3/224	NT	8.0%	intergenic (+36/‑105)	urtA/urtB	urea ABC transporter substrate‑binding protein/urea ABC transporter permease
	?	NC_002947	= 5509807	36 (1.400)					intergenic (+98/‑43)	urtA/urtB	urea ABC transporter substrate‑binding protein/urea ABC transporter permease

CAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGC  >  NC_002947/5509607‑5509893                                                                                                                                           |                                                                                                                                                     cAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCt                                                                                                                                               <  1:152515/146‑1 (MQ=255) cAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCt                                                                                                                                               >  2:152515/1‑146 (MQ=255)                aaCCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAgg                                                                                                                            >  1:168445/1‑150 (MQ=255)                        agcCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAAc                                                                                                                    <  1:103523/150‑1 (MQ=255)                        agcCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAAc                                                                                                                    >  1:362073/1‑150 (MQ=255)                          ccGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCt                                                                                                                  >  2:702974/1‑150 (MQ=255)                              tGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCa                                                                                                              <  1:702974/150‑1 (MQ=255)                                cGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGCGTGCATGGAGCCGAAATGTAGCACATTAACGGCTGAACGCACTCTTACGGTGAGCGCTTAGTTTTCAAACCTTGCAcc                                                                                                            <  2:7814/150‑1 (MQ=255)                                           aTGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCTCAGGTTTCAAACCTTGCACCGTCTCTGTGTa                                                                                                 <  2:253943/150‑1 (MQ=255)                                                   cGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCggg                                                                                         >  1:522968/1‑150 (MQ=255)                                                    gTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGGGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCTCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGc                                                                                        <  1:714502/150‑1 (MQ=255)                                                          tCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAgcccgctcctacacagagacggtgcaaggtttgaaacctgcgcggtccttgtaggagcgggttcaccc                                                                                  <  1:325258‑M1/150‑69 (MQ=255)                                                               gCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCAcc                                                                                                            >  1:657963/1‑119 (MQ=255)                                                               gCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCAcc                                                                                                            <  2:657963/119‑1 (MQ=255)                                                                       aaGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCaa                                                                     <  2:522968/150‑1 (MQ=255)                                                                         gCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCACGAAGAATCCAaca                                                                   >  1:341438/1‑150 (MQ=255)                                                                              cAGATTACGCCGTGAAGGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGAt                                                              <  2:205143/150‑1 (MQ=255)                                                                                      gCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAgcccgctcctacacagagacggtgcaaggtttgaaacctgcgcggtccttgtaggagcggg                                                                                         <  1:44951‑M1/115‑62 (MQ=255)                                                                                      gCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAgcccgctcctacacagagacggtgcaaggtttgaaacctgcgcggtccttgtaggagcggg                                                                                         >  2:44951‑M1/1‑54 (MQ=255)                                                                                                 tAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGATGAAACCGCTCCTACAAGGACCCCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATg                                           >  2:719505/1‑150 (MQ=255)                                                                                                     tGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCa                                       >  2:300853/1‑150 (MQ=255)                                                                                                            aTGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCg                                                                                           >  2:528752/1‑91 (MQ=255)                                                                                                            aTGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCg                                                                                           <  1:528752/91‑1 (MQ=255)                                                                                                            aTGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGATTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCCCCCCCGAAGAATCCAACACCGATTTCCAGGCTTGCCCGCATGCTCAGACTCCt                                >  1:176434/1‑150 (MQ=255)                                                                                                              ggggCTGCTTTGCAGCCCATTCGCGGGTGACCCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGc                              <  1:122402/150‑1 (MQ=255)                                                                                                                      tttGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACcctc                      >  1:579765/1‑150 (MQ=255)                                                                                                                           aGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCctgct                 <  2:168445/150‑1 (MQ=255)                                                                                                                            gCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGAc                                    >  1:576631/1‑130 (MQ=255)                                                                                                                            gCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGAc                                    <  2:576631/130‑1 (MQ=255)                                                                                                                             cccATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCtgctgc               >  1:187508/1‑150 (MQ=255)                                                                                                                             cccATTCGCGGGTGAACCCGCTCATACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCaa                                                                     <  2:690537/96‑1 (MQ=255)                                                                                                                             cccATTCGCGGGTGAACCCGCTCATACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCaa                                                                     >  1:690537/1‑96 (MQ=255)                                                                                                                               cATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATc                                                                        >  1:690260/1‑91 (MQ=255)                                                                                                                               cATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATc                                                                        <  2:690260/91‑1 (MQ=255)                                                                                                                                aTTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTaa            >  1:472324/1‑150 (MQ=255)                                                                                                                                 ttCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATcc                                                                       >  1:429413/1‑90 (MQ=255)                                                                                                                                 ttCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATcc                                                                       <  2:429413/90‑1 (MQ=255)                                                                                                                                      gggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCtcacccgcgaatgggctgcaaagcagccccatgcactcagttacctttcacggcgtaatctggccgcttgtcattgcccgga      <  1:325258‑M2/150‑83 (MQ=255)                                                                                                                                      gggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTcc                                 >  2:659467/1‑123 (MQ=255)                                                                                                                                      gggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTcc                                 <  1:659467/123‑1 (MQ=255)                                                                                                                                       ggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTTCTGCTAAt           >  2:155514/1‑144 (MQ=255)                                                                                                                                       ggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTTCTGCTAAt           <  1:155514/144‑1 (MQ=255)                                                                                                                                        gTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTg    >  1:195371/1‑150 (MQ=255)                                                                                                                                          gAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTCAAAGGATTGCCCGCATGCTCATACGCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGc  >  1:499140/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                     CAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGC  >  NC_002947/5509607‑5509893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.