New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5896257 =	23 (0.820)	4 (0.150)	4/234	NT	14.3%	intergenic (‑26/+159)	cysU/sbp‑II	sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	5896277 =	26 (0.970)					intergenic (‑46/+139)	cysU/sbp‑II	sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein

AGGAAAGCGGGGCCGCGTGCGGCCCATTCGCGGCACAAGGTCGCTTCCACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGGATTGTTTCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5896408‑5896257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTGTGC  >  NC_002947/5896277‑5896424                                                                                                                                                                                                                                                                                                              AGGAAAGCGGGGCCGCGTGCGGCCCATTCGCGGCACAAGGTCGCTTCCCCAAGGGACGATTATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGGATTGTTTCCGG                                                                                                                                                        >  2:441947/1‑150                                                 ACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTTT                                                                                                                                        <  1:664125/118‑1                                                 ACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTTT                                                                                                                                        >  2:664125/1‑118                                                      GAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTT                                                                                                                                         >  1:556461/1‑112                                                      GAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGAAACAATCCCGGGCCGGTGCAAGCTTT                                                                                                                                         <  2:556461/112‑1                                                                                                                                                   CCGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTG                                                     >  1:250245/1‑103                                                                                                                                                   CCGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTG                                                     <  2:250245/103‑1                                                                                                                                                    CGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTG     >  1:328393/1‑150                                                                                                                                                    CGGGCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTG     <  1:385508/150‑1                                                                                                                                                       GCCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAACGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTGTGC  <  2:365537/150‑1                                                                                                                                                                                                                                                                                                              AGGAAAGCGGGGCCGCGTGCGGCCCATTCGCGGCACAAGGTCGCTTCCACAAGGAACCATGATCTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCTGCCAAGCAGCCCCAGGATTCAAAAGCTTGCACCGGCCCGGGATTGTTTCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5896408‑5896257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcCGGTGCAAGCTTTTGAATCCTGGGGCTGCTTGGCAGCCCATTCGCGACACAAGGCCGCTCCCACAGGAGATCATGGTTCCTTGTGGAAGCGACCTTGTGCCGCGAATGGGCCGCACGCGGCCCCGCTTTCCTTTGGCGCTTACTGTGC  >  NC_002947/5896277‑5896424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.