New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	204059 =	4 (0.140)	4 (0.150)	4/234	NT	36.7%	coding (9565/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	204088 =	10 (0.370)					coding (9594/26049 nt)	PP_0168	putative surface adhesion protein

CGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACT  >  NC_002947/203911‑204199                                                                                                                                                     |                                                                                                                                             ggcaccgcccaactcgaggttctcgaaggtcgcaccagtggcgtccaccgccgagttgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGt                                                                                                                                             >  2:219758‑M1/149‑150 (MQ=255)    accgcccaactcgaggttctcgaaggtcgcaccagtggcgtccaccgccgagttgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGAc                                                                                                                                          >  1:345897‑M1/146‑150 (MQ=255)                                                                                  gtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGaaa                                                                                                 >  1:566760‑M1/68‑113 (MQ=255)                                                                                  gtcgttgtagacgtcatcaccctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGaaa                                                                                                 <  2:566760‑M1/46‑1 (MQ=255)                                                                                                      cctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCAcc                                                                                                                 <  1:373787‑M1/30‑1 (MQ=255)                                                                                                      cctgagcagcgtgggtgtacggcgcgctggtttcaccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCAcc                                                                                                                 >  2:373787‑M1/48‑77 (MQ=255)                                                                                                                          aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAAc                    >  2:588430/1‑150 (MQ=31)                                                                                                                                  tcagggtCACGACCAGGTCGTAAGGCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGt            >  1:22433/7‑150 (MQ=11)                                                                                                                                          aCGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCa    >  1:246049/1‑150 (MQ=34)                                                                                                                                            gACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGACCAGATCAGCCTGGGAATCAACTCGGCGGTGGAcaccacg  >  1:641913/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             CGAGCCTGGTACCCCAGGCAACCCGGGCGGCAGCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCTCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACT  >  NC_002947/203911‑204199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.