New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	217935 =	45 (1.600)	3 (0.110)	3/230	NT	7.1%	coding (23441/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	217993 =	37 (1.410)					coding (23499/26049 nt)	PP_0168	putative surface adhesion protein

CAAGAACCTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGACGGTC  >  NC_002947/217786‑218083                                                                                                                                                      |                                                                                                                                                     catcggactgcacgttggtagtggtgctgctggagttcgcgctgccggagttggcaaagaccgtcttcagatcctcgccggtaatgccgttgccgccagtacccaggcctttgaggctggtccagacttccttggtcagccctttggact                                                                                                                                                      <  1:396480‑M1/1‑1 (MQ=255)    cggactgcacgttggtagtggtgctgctggagttcgcgctgccggagttggcaaagaccgtcttcagatcctcgccggtaatgccgttgccgccagtacccaggcctttgaggctggtccagacttccttggtcagccctttggacTCGa                                                                                                                                                   <  1:732716‑M1/4‑1 (MQ=255)        cTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATc                                                                                                                                               >  1:100763/1‑150 (MQ=255)        cTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATc                                                                                                                                               >  2:469175/1‑150 (MQ=255)              ttcgttcCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGCACGATGGCACCAACCTGGGCAGCGAAGTGAACATGAAGGGCGATATCAGCACg                                                                                                                                         >  1:717487/1‑150 (MQ=255)                   gcggccccTTAACCAGGCGGGTGTGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTTGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGc                                                                                                                                    <  2:134427/145‑1 (MQ=255)                              aCCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCATAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGCCAGCGAGGTGGCCATGAAGGTCGATATCTTCCCTGTCGCCGACAAACCgc                                                                                                                         >  2:310185/1‑149 (MQ=255)                                           ggACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCATCCCGGTTGCCGACAAACCGACCCTGAGCTTCgg                                                                                                            >  1:82672/1‑150 (MQ=255)                                                 cTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAgcgc                                                                                                      <  1:469175/150‑1 (MQ=255)                                                        ggtAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAGGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCAGGAAGGTCGATATAAGCCCGGGTGCCGACAAACCGACCCTGAGATTCGGCAGCGCCGATATc                                                                                               >  2:263776/1‑150 (MQ=255)                                                          tAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGa                                                                                                                                 >  1:559015/1‑114 (MQ=255)                                                          tAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATAGCAGCCCGGTTGCCGa                                                                                                                                 <  2:559015/114‑1 (MQ=255)                                                            aTGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGt                                                                                           <  2:100763/150‑1 (MQ=255)                                                             ccgtcttcagatcctcgccggtaatgccgttgccgccagtacccaggcctttgaggctggtccagacttccttggtcagccctttggacTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTc                                                                                          >  2:400942‑M1/90‑150 (MQ=255)                                                              ggTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGat                                                                                                  >  1:632697/1‑141 (MQ=255)                                                              ggTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGat                                                                                                  <  2:632697/141‑1 (MQ=255)                                                              ggTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTcc                                                                                         <  1:525800/150‑1 (MQ=255)                                                               gtgtGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATGAGCCCGGTTTCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCa                                                                                        >  2:48080/1‑150 (MQ=255)                                                               gtgtGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCa                                                                                        >  2:153845/1‑150 (MQ=255)                                                               gtgtGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCa                                                                                        >  2:729336/1‑150 (MQ=255)                                                                 gtgGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCaaa                                                                                      <  1:544154/150‑1 (MQ=255)                                                                 gtgGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCaaa                                                                                      <  2:688146/150‑1 (MQ=255)                                                                   gggTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGcc                                                                                                                                   >  2:321223/1‑103 (MQ=255)                                                                   gggTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGcc                                                                                                                                   <  1:321223/103‑1 (MQ=255)                                                                      tAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCt                                                                                 >  2:204501/1‑150 (MQ=255)                                                                          cAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGAcc                                                                             <  1:729336/150‑1 (MQ=255)                                                                          cAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGAcc                                                                             >  2:446493/1‑150 (MQ=255)                                                                            gAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCATCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCaa                                                                           <  2:82672/150‑1 (MQ=255)                                                                             aaGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAg                                                                          <  2:220151/150‑1 (MQ=255)                                                                                 cTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGt                                                                                                                                       >  2:362883/1‑85 (MQ=255)                                                                                 cTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGt                                                                                                                                       <  1:362883/85‑1 (MQ=255)                                                                                  tGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGt                                                                     >  1:671080/1‑150 (MQ=255)                                                                                      tACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTgg                                                                 <  1:153845/150‑1 (MQ=255)                                                                                         gCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGAcc                                                              >  2:708762/1‑150 (MQ=255)                                                                                          cccAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGGCCAACGTGCCGATCAAGGAAGACGGGACCa                                                             >  2:418969/1‑150 (MQ=255)                                                                                            cAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGc                                                           <  2:671080/150‑1 (MQ=255)                                                                                                  aagttcaagCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCaaa                                                     >  1:506289/1‑150 (MQ=255)                                                                                                       caagCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGCTTGCGGACAAACCGACCCTGAGCTTCGGCAGCGCGGATATCGAGTCCAAAGTGCTGACCAAGGACGTCTGGACAAGCCTCAAAGGCCt                                                >  2:40570/1‑150 (MQ=255)                                                                                                        caggcctttgaggctggtccagacttccttggtcagccctttggacTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGt                                                                                           <  2:76254‑M1/60‑1 (MQ=255)                                                                                                        caggcctttgaggctggtccagacttccttggtcagccctttggacTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGt                                                                                           >  1:76254‑M1/47‑106 (MQ=255)                                                                                                        aagCCGAACAACGACACCCACCGGGGCAGCGAAGTGACCAGGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTg                                               >  2:559144/1‑150 (MQ=255)                                                                                                         agCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACAAGCCTCAAAGGCCTgg                                              <  1:446493/150‑1 (MQ=255)                                                                                                          gCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTggg                                             <  2:506289/150‑1 (MQ=255)                                                                                                           ccGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGt                                            >  2:620335/1‑150 (MQ=255)                                                                                                            cGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCgg                                                                                                            >  1:49511/1‑85 (MQ=255)                                                                                                            cGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCgg                                                                                                            <  2:49511/85‑1 (MQ=255)                                                                                                              aaCGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGAc                                                                                                                        >  1:157148/1‑71 (MQ=255)                                                                                                              aaCGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGAc                                                                                                                        <  2:157148/71‑1 (MQ=255)                                                                                                                           aCCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCa                            >  1:330067/1‑150 (MQ=255)                                                                                                                                             ccATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGa          >  2:396480/1‑150 (MQ=255)                                                                                                                                                 gAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGAc      >  1:222687/1‑150 (MQ=255)                                                                                                                                                     gTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGACGGTc  <  1:263776/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CAAGAACCTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGACGGTC  >  NC_002947/217786‑218083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.