| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 242078 | 31 (1.100) | 7 (0.260) | 7/234 | NT | 18.5% | intergenic (+10/‑213) | PP_0189/PP_0190 | heme biosynthesis protein/disulfide bond formation protein B |
| ? | NC_002947 | = 242100 | 32 (1.190) | intergenic (+32/‑191) | PP_0189/PP_0190 | heme biosynthesis protein/disulfide bond formation protein B | |||||
CGAGGCCTGTGCTGAGCTGGCCCGCCTGCTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTGTCGTTGCTGTCGTGCCTTGAA > NC_002947/241930‑242227 | agAGGCCTGTGCTGAGCTGGCCCGCCTGCTCTCGGGGCGGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAg < 2:607683/149‑1 (MQ=255) cTGGCCCGCCTGCTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGc < 2:347103/150‑1 (MQ=255) tGGCCCGCCTGCTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCg < 1:737018/150‑1 (MQ=255) cGCCTGCTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTt < 1:529049‑M2/150‑2 (MQ=255) tGCTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCTGCCCCCAAagcccgcacctttgcgcgggccttgg < 1:612061‑M1/150‑27 (MQ=255) cTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTggggg < 2:529049/150‑1 (MQ=255) tCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTttg > 1:189299‑M2/1‑142 (MQ=255) tCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTttg < 2:189299‑M2/145‑4 (MQ=255) ggCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTaa < 1:603834/150‑1 (MQ=255) gCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAAt > 2:475165/1‑150 (MQ=255) tGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGACTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTttgggg > 1:220643‑M2/1‑133 (MQ=255) tGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGACTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTttgggg < 2:220643‑M2/139‑7 (MQ=255) gggCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTa < 2:318456/150‑1 (MQ=255) ggCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTAt < 1:96237/150‑1 (MQ=255) agaCCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCttt < 1:186788/150‑1 (MQ=255) cGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCt > 2:5381/1‑150 (MQ=255) gAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTg > 2:555259/1‑150 (MQ=255) cgcAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCa < 1:5381/150‑1 (MQ=255) agcaACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGtt < 1:2313/150‑1 (MQ=255) gCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAagcccgcacctttgcgcgggccttggggtag < 1:605762‑M1/117‑32 (MQ=255) gCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAagcccgcacctttgcgcgggccttggggtag > 2:605762‑M1/1‑86 (MQ=255) cAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCC‑ACCCCAAagcccgcacctttgcgcgggccttggg < 1:591970‑M1/106‑28 (MQ=255) cAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCC‑ACCCCAAagcccgcacctttgcgcgggccttggg > 2:591970‑M1/1‑79 (MQ=255) ggCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGa > 2:415143/1‑132 (MQ=255) ggCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGa < 1:415143/132‑1 (MQ=255) tgctgGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGcctcc < 1:475165/150‑1 (MQ=255) tgGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCa > 2:133550/1‑115 (MQ=255) tgGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCa < 1:133550/115‑1 (MQ=255) gcgcTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAagcccgcacctttgcgcgggcc < 1:661728‑M1/65‑23 (MQ=255) gcgcTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAagcccgcacctttgcgcgggcc > 2:661728‑M1/1‑43 (MQ=255) gcTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCCAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCa < 1:574059/72‑1 (MQ=255) gcTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCa > 2:574059/1‑72 (MQ=255) tttGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAg < 1:471896/67‑1 (MQ=255) tttGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAg > 2:471896/1‑67 (MQ=255) cAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCa > 2:153962/1‑150 (MQ=255) aGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAg > 2:455920/1‑150 (MQ=255) aGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGa > 2:250200/1‑150 (MQ=255) cGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACtt < 1:339665/150‑1 (MQ=255) gTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTg < 1:455920/150‑1 (MQ=255) cT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctggaacagc > 2:605762‑M2/1‑31 (MQ=255) cT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctggaacagc < 1:605762‑M2/117‑87 (MQ=255) cT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGaa > 2:678761/1‑74 (MQ=255) cT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGaa < 1:678761/74‑1 (MQ=255) cT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATGTAGCTTTCGCGGTCGGTTTGATCGGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTGTCGTTTCTGTCGt > 2:222892/1‑150 (MQ=255) ccccAAagcccgcacctttgcgcgggccttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaagtccctcctggaacagctggttgctgcgctcggtctcgccca > 1:220643‑M1/1‑6 (MQ=255) ccccAAagcccgcacctttgcgcgggccttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaagtccctcctggaacagctggttgctgcgctcggtctcgccca < 2:220643‑M1/139‑134 (MQ=255) ccccAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTGTCGTTGCTGTCGTGcc > 2:866/1‑150 (MQ=255) ccccAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTGTCGTTGCTGTCGTGcc < 1:555259/150‑1 (MQ=255) cccAAGGCCCGCGCAAAGGTGCGGGCTttggggtgggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctg > 2:591970‑M2/1‑27 (MQ=255) cccAAGGCCCGCGCAAAGGTGCGGGCTttggggtgggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctg < 1:591970‑M2/106‑80 (MQ=255) cccAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCat > 1:630693/1‑100 (MQ=255) cccAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCat < 2:630693/100‑1 (MQ=255) ccAAGGCCCGCGCAAAGGTGCGGGCTttgggggcaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctggaacagctggttgctgcgctcggtctcgcccagccccgcgagca < 1:612061‑M2/150‑125 (MQ=255) cAAagcccgcacctttgcgcgggccttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctggaacagctggttgctgcgctcggtctcgcccagccccgcga > 1:189299‑M1/1‑3 (MQ=255) cAAagcccgcacctttgcgcgggccttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctggaacagctggttgctgcgctcggtctcgcccagccccgcga < 2:189299‑M1/145‑143 (MQ=255) cAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTGTCGTTGCTGTCGTGCCTTg > 1:503800/1‑150 (MQ=255) aagcccgcacctttgcgcgggccttggggtaggtcaggcgcgcacgccttctggcaaaggcagcgccagcaggcgctcgtccagcaggccaaggccctcctggaacagctggttgctgcgctcggtctcgcccagccccgcgagcaggcg < 1:529049‑M1/150‑150 (MQ=255) | CGAGGCCTGTGCTGAGCTGGCCCGCCTGCTCGCGGGGCTGGGCGAGACCGAGCGCAGCAACCAGCTGTTCCAGGAGGGCCTTGGCCTGCTGGACGAGCGCCTGCTGGCGCTGCCTTTGCCAGAAGGCGTGCGCGCCTGACCT‑ACCCCAAGGCCCGCGCAAAGGTGCGGGCTTTGGGGGCAGGTAATTTATCTTTCGCTGTCAGTTTGATCTGAAGTCCATTTCTTCCGTCGCCTCCTACGGCATATCTGGAAATTTCCTACGCGATTCAGTGACTTGTCGTTGCTGTCGTGCCTTGAA > NC_002947/241930‑242227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |