New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 31030339 (1.380)4 (0.150) 3/238 NT 9.2% coding (2075/2346 nt) PP_0256 putative oxidoreductase
?NC_002947 = 310360 41 (1.500)coding (2018/2346 nt) PP_0256 putative oxidoreductase

ATGCCGCCGCCTGCCCGGCAGGTATGTCGAAGGCCAGCAGGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTACGCGTTCGTCAAGCAGCGTGTCG  >  NC_002947/310154‑310449
                                                                                                                                                     |                                                                                                                                                  
atGCCGCCGCCTGCCCGGCAGGTATGTCGAAGGCCAGCAGGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACA                                                                                                                                                    <  1:564133‑M1/150‑1 (MQ=255)
           tGCCCGGCAGGTATGTCGAAGGCCAGCAGGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCgcgc                                                                                                                                         >  2:52081/1‑150 (MQ=255)
             cccGGCAGGTATGTCGAAGGCCAGCAGGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTg                                                                                                                                       <  2:751878/150‑1 (MQ=255)
                        tGTCGAAGGCCAGCAGGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAAAGATGTCGACCTTCTGCCCCCGCTGAAAAGCCCGGCGGGTGATGTCGGCTTCGTTGGCGAACAGCACCCCGCGCTGGCCccgcccgc                                                                                                                            >  2:477273/1‑150 (MQ=255)
                                     cagGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGCAACGATGTCTGCCATCTGCCCCGGCTGGAAGCCCAGTCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGgtc                                                                                                               <  2:648464/150‑1 (MQ=255)
                                        ggTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGgtcgtc                                                                                                            <  2:543809/150‑1 (MQ=255)
                                        ggTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCCACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCAAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGgtcgtc                                                                                                            <  1:271593/150‑1 (MQ=255)
                                          tAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCa                                                                                                          >  2:708106/1‑150 (MQ=255)
                                          tAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCa                                                                                                          <  2:626725/150‑1 (MQ=255)
                                           aaaGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAg                                                                                                         <  1:696235/150‑1 (MQ=255)
                                                cTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGt                                                                                                    >  1:29032/1‑150 (MQ=255)
                                                   gCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGTCGTata                                                                                                 <  2:29032/150‑3 (MQ=255)
                                                     aCCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCACGGTAGCGGTCGTCCAGGCCGTAGATa                                                                                               >  1:372070/1‑150 (MQ=255)
                                                       ccGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAccactatctacggcctggacgaccgctaccgcggcgtgcgtggccagcgcgaggg                                                                                             >  2:744873‑M1/1‑95 (MQ=255)
                                                        cGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAccactatctacggcctggacgaccgctaccgcggcgtgcgtggccagcgcgaggtg                                                                                            <  1:744873‑M1/150‑57 (MQ=255)
                                                                aTGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAgtg                                                                                            <  1:263582/142‑1 (MQ=255)
                                                                aTGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAgtg                                                                                            >  2:263582/1‑142 (MQ=255)
                                                                 tGTTCAGCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTAc                                                                                   >  2:404839/1‑150 (MQ=255)
                                                                   ttCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTg                                                                                 >  2:438601/1‑150 (MQ=255)
                                                                    tCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCTGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGa                                                                                <  1:730123/150‑1 (MQ=255)
                                                                      aTCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATc                                                                              >  1:575513/1‑150 (MQ=255)
                                                                        ccccccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGTCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGCTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGt                                                                            <  1:609683/150‑1 (MQ=255)
                                                                          ccccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGc                                                                          >  2:666326/1‑150 (MQ=255)
                                                                          ccccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGc                                                                          >  2:677721/1‑150 (MQ=255)
                                                                          ccccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGc                                                                          <  1:404839/150‑1 (MQ=255)
                                                                           cccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAccactatctacggcctggacgaccgctaccgcggcgtgcgtggccagcgcgaggtg                                                                                            <  1:143581‑M1/131‑57 (MQ=255)
                                                                           cccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAccactatctacggcctggacgaccgctaccgcggcgtgcgtggccagcgcgaggtg                                                                                            >  2:143581‑M1/1‑75 (MQ=255)
                                                                           cccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCg                                                                         >  1:208265/1‑150 (MQ=255)
                                                                            ccACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGa                                                                        <  2:134673/150‑1 (MQ=255)
                                                                                  cGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCAt                                                                  <  1:74982/150‑1 (MQ=255)
                                                                                   gAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATc                                                                 >  2:738097/1‑150 (MQ=255)
                                                                                    aaaCGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCg                                                                >  1:360272/1‑150 (MQ=255)
                                                                                       cGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCCAtt                                                             <  2:575513/150‑1 (MQ=255)
                                                                                                      gCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTg                                              <  1:52081/150‑1 (MQ=255)
                                                                                                       ccccGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTgg                                             <  1:677721/150‑1 (MQ=255)
                                                                                                       ccccGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGACAGCCCATCGATTGCATGATCAAGTCTgg                                             <  1:477273/150‑1 (MQ=255)
                                                                                                            gCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTc                                                >  1:15929/1‑142 (MQ=255)
                                                                                                            gCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTc                                                <  2:15929/142‑1 (MQ=255)
                                                                                                                gAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAACACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGcc                                    >  2:345603/1‑150 (MQ=255)
                                                                                                                     ccAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTgg                               >  2:416357/1‑150 (MQ=255)
                                                                                                                           ggATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTa                         <  1:659756/150‑1 (MQ=255)
                                                                                                                              tgatgTCGGCTTCGTTGGCGAACAACACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTAcgc                      <  1:345603/150‑1 (MQ=255)
                                                                                                                                          cGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGACGCGTACGCGTTCGTCAagca          <  1:438601/150‑1 (MQ=255)
                                                                                                                                           gTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTACGCGTTCGTCAagcag         <  2:360272/150‑1 (MQ=255)
                                                                                                                                                 gAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTACGCGTTCGTCAAGCAGCGTGTc   >  1:579101/1‑150 (MQ=255)
                                                                                                                                                 gAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTACGCGTTCGTCAAGCAGCGTGTc   >  1:412002/1‑150 (MQ=255)
                                                                                                                                                  aaCAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTACGCGTTCGTCAAGCAGCgtgttg  >  2:317069/1‑148 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
ATGCCGCCGCCTGCCCGGCAGGTATGTCGAAGGCCAGCAGGGTAAAGCCTTGCACCCGGCGCACATGTTCATCCCCCCACAGCGAAACGATGTCGACCTTCTGCCCCGGCTGGAAGCCCAGGCGGATGATGTCGGCTTCGTTGGCGAACAGCACCTCGCGCTGGCCACGCACGCCGCGGTAGCGGTCGTCCAGGCCGTAGATAGTGGTGTTGTACTGATCGTGCGAGCGCATCGATTGCATGATCAAGTCTGGCAACTGGCCGCTGGCGCGTACGCGTTCGTCAAGCAGCGTGTCG  >  NC_002947/310154‑310449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.