New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	738855 =	39 (1.380)	4 (0.140)	4/242	NT	10.1%	coding (564/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	738889 =	33 (1.190)					coding (530/867 nt)	pilD	leader peptidase/N‑methyltransferase

CCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCA  >  NC_002947/738710‑738997                                                                                                                                                  |                                                                                                                                               ccGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCgg                                                                                                                                            >  1:677635/1‑150 (MQ=255)          acaGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTgcgc                                                                                                                                   <  2:191541/150‑1 (MQ=255)            agcagcGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGccc                                                                                                                                 <  1:304027/150‑1 (MQ=255)              cagcGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATTTCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCca                                                                                                                               <  2:587741/150‑1 (MQ=255)                gcGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCcaca                                                                                                                             <  1:181007/150‑1 (MQ=255)                        ggCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCg                                                                                                                     <  2:487781/150‑1 (MQ=255)                         gcagcaCCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGCGGTACCCGCCCACTGCGCCCCACAGGGCGTCgg                                                                                                                    >  2:375958/1‑150 (MQ=255)                         gcagcaCCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCgg                                                                                                                    <  1:159277/150‑1 (MQ=255)                                        ccccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGa                                                                                                     >  1:8343/1‑150 (MQ=255)                                                gCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAg                                                                                             <  2:677635/150‑1 (MQ=255)                                                          gcgcCATCAGCTTGAAATCGCCATACAACATGCAATACTTCCCGGTAACTAGCGTGAACACCCAGTACAGCGTCCACAGGCTGATGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGACACGGGTATTGACGa                                                                                   >  1:428777/1‑150 (MQ=255)                                                           cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACAt                                                                                                        <  1:360611/128‑1 (MQ=255)                                                           cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACAt                                                                                                        >  2:360611/1‑128 (MQ=255)                                                           cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGAt                                                                                  <  1:83710/150‑1 (MQ=255)                                                             ccATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa                                                                                <  2:427055/150‑1 (MQ=255)                                                                 ccaccagctgctgccggatgtgctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAt                                                                                                    <  1:330473‑M1/45‑1 (MQ=255)                                                                 ccaccagctgctgccggatgtgctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAt                                                                                                    >  2:330473‑M1/82‑126 (MQ=255)                                                                 cAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGccc                                                                            <  2:598116/150‑1 (MQ=255)                                                                   gCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa                                                                          <  1:286676/150‑1 (MQ=255)                                                                   gCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa                                                                          <  2:203219/150‑1 (MQ=255)                                                                              ccATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATAAGCCCTAGCCACATGGTc                                                               >  1:554649/1‑150 (MQ=255)                                                                                     ccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcagca                                                        >  2:346277/1‑150 (MQ=255)                                                                                          ccttccttGGCGGTGGCCAGCCTGAACACCCAGGACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc                                                   >  2:10178/1‑150 (MQ=255)                                                                                            ttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcggcaccagcgc                                                 >  1:184199/1‑148 (MQ=255)                                                                                                ttGCCGGTGACCAGCCTGGACCCCCAGTACACCGGCCAGAGGCTGAGGTCCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAGGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCCCCAGCACATcc                                             <  1:375958/150‑1 (MQ=255)                                                                                                         aCCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCagcagc                                    >  2:693801/1‑150 (MQ=255)                                                                                                          ccAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCt                                   >  1:343170/1‑150 (MQ=255)                                                                                                           cAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTc                                                                                                                      >  2:188766/1‑66 (MQ=255)                                                                                                           cAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTc                                                                                                                      <  1:188766/66‑1 (MQ=255)                                                                                                            aGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtgg                                 >  1:643377/1‑150 (MQ=255)                                                                                                             gCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggt                                >  2:378168/1‑150 (MQ=255)                                                                                                              ccTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtg                               <  1:378168/150‑1 (MQ=255)                                                                                                                tGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa                                                                                <  1:622361/99‑1 (MQ=255)                                                                                                                tGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa                                                                                >  2:622361/1‑99 (MQ=255)                                                                                                                  aaCACCTAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTcc                           <  1:517349/150‑1 (MQ=255)                                                                                                                    cacCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGc                         >  2:655914/1‑150 (MQ=255)                                                                                                                      tcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc                                                   >  2:381794‑M1/29‑122 (MQ=255)                                                                                                                      tcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc                                                   <  1:381794‑M1/94‑1 (MQ=255)                                                                                                                           nacacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATc                  >  2:391023/2‑150 (MQ=255)                                                                                                                             cacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTTGTCAGCCTCAGCACGTCCGGGGGCAGCTGGTGGTCGGCATCGAGCAg                <  2:8343/150‑1 (MQ=255)                                                                                                                             cacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAg                >  2:2807/1‑150 (MQ=255)                                                                                                                              acCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATACGGCAGCAGCTGGTGGTCCGCATCGATCacg               >  1:105903/1‑148 (MQ=255)                                                                                                                                        ggCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCca     <  2:343170/150‑1 (MQ=255)                                                                                                                                           tGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCcagca  <  1:346277/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               CCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCA  >  NC_002947/738710‑738997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.