New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	738855 =	39 (1.380)	4 (0.140)	4/242	NT	10.1%	coding (564/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	738889 =	33 (1.190)					coding (530/867 nt)	pilD	leader peptidase/N‑methyltransferase

CCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTAC  >  NC_002947/738749‑739034                                                                                                                                             |                                                                                                                                                  ccccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGa                                                                                                                                          >  1:8343/1‑150 (MQ=255)         gCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAg                                                                                                                                  <  2:677635/150‑1 (MQ=255)                   gcgcCATCAGCTTGAAATCGCCATACAACATGCAATACTTCCCGGTAACTAGCGTGAACACCCAGTACAGCGTCCACAGGCTGATGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGACACGGGTATTGACGa                                                                                                                        >  1:428777/1‑150 (MQ=255)                    cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACAt                                                                                                                                             >  2:360611/1‑128 (MQ=255)                    cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACAt                                                                                                                                             <  1:360611/128‑1 (MQ=255)                    cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGAt                                                                                                                       <  1:83710/150‑1 (MQ=255)                      ccATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa                                                                                                                     <  2:427055/150‑1 (MQ=255)                          ccaccagctgctgccggatgtgctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAt                                                                                                                                         <  1:330473‑M1/45‑1 (MQ=255)                          ccaccagctgctgccggatgtgctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAt                                                                                                                                         >  2:330473‑M1/82‑126 (MQ=255)                          cAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGccc                                                                                                                 <  2:598116/150‑1 (MQ=255)                            gCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa                                                                                                               <  1:286676/150‑1 (MQ=255)                            gCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa                                                                                                               <  2:203219/150‑1 (MQ=255)                                       ccATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATAAGCCCTAGCCACATGGTc                                                                                                    >  1:554649/1‑150 (MQ=255)                                              ccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcagca                                                                                             >  2:346277/1‑150 (MQ=255)                                               gctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGa                                                                                                                        >  2:381794‑M2/95‑122 (MQ=255)                                               gctggtgctgccgaccatgtggctagggctgatcgtcaatgcctttggcatccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGa                                                                                                                        <  1:381794‑M2/28‑1 (MQ=255)                                                   ccttccttGGCGGTGGCCAGCCTGAACACCCAGGACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc                                                                                        >  2:10178/1‑150 (MQ=255)                                                     ttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcggcaccagcgc                                                                                      >  1:184199/1‑148 (MQ=255)                                                         ttGCCGGTGACCAGCCTGGACCCCCAGTACACCGGCCAGAGGCTGAGGTCCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGAGGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCCCCAGCACATcc                                                                                  <  1:375958/150‑1 (MQ=255)                                                                  aCCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCagcagc                                                                         >  2:693801/1‑150 (MQ=255)                                                                   ccAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCt                                                                        >  1:343170/1‑150 (MQ=255)                                                                     aGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtgg                                                                      >  1:643377/1‑150 (MQ=255)                                                                      gCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggt                                                                     >  2:378168/1‑150 (MQ=255)                                                                       ccTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtg                                                                    <  1:378168/150‑1 (MQ=255)                                                                         tGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa                                                                                                                     >  2:622361/1‑99 (MQ=255)                                                                         tGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCa                                                                                                                     <  1:622361/99‑1 (MQ=255)                                                                           aaCACCTAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTcc                                                                <  1:517349/150‑1 (MQ=255)                                                                             cacCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGc                                                              >  2:655914/1‑150 (MQ=255)                                                                               tcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc                                                                                        <  1:381794‑M1/94‑1 (MQ=255)                                                                               tcgtcaatgcctttggcatccatgtgccCCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccagc                                                                                        >  2:381794‑M1/29‑122 (MQ=255)                                                                                    nacacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATc                                                       >  2:391023/2‑150 (MQ=255)                                                                                      cacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTTGTCAGCCTCAGCACGTCCGGGGGCAGCTGGTGGTCGGCATCGAGCAg                                                     <  2:8343/150‑1 (MQ=255)                                                                                      cacCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAg                                                     >  2:2807/1‑150 (MQ=255)                                                                                       acCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATACGGCAGCAGCTGGTGGTCCGCATCGATCacg                                                    >  1:105903/1‑148 (MQ=255)                                                                                                atccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtgg                                                                   >  2:330473‑M2/46‑126 (MQ=255)                                                                                                atccatgtgcccctggccgacgcactgtggggcgcagtggccgggGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtgg                                                                   <  1:330473‑M2/81‑1 (MQ=255)                                                                                                 ggCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCca                                          <  2:343170/150‑1 (MQ=255)                                                                                                    tGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCcagca                                       <  1:346277/150‑1 (MQ=255)                                                                                                            CCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAg                               <  2:184319‑M1/150‑1 (MQ=255)                                                                                                             cGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAgg                              >  1:338844/1‑150 (MQ=255)                                                                                                                      cgcCCCACAGTGCGTCGGCCAGAGGCACCTGGATGAAAAAGGAATTGATGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACTTCCGGCAGCAACTGGTGGTACGCATCGATCAGGCTCACCGCCAGCAGGAACAAGGTCAGCGGCa                     <  2:105903/150‑1 (MQ=255)                                                                                                                                 gCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAAc          <  2:643377/150‑1 (MQ=255)                                                                                                                                        ccAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtg                                                                       >  1:638826/1‑82 (MQ=255)                                                                                                                                        ccAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtg                                                                       <  2:638826/82‑1 (MQ=255)                                                                                                                                        ccAGGGGCACATGGATGCCAAAGGCATTGACGATAAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTa   <  2:554649/150‑1 (MQ=255)                                                                                                                                         cAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTAc  >  2:531038/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                  CCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAGCAGGCACCAGGTCAGCGGCAGAGCCACCAACGCCTCTAC  >  NC_002947/738749‑739034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.