| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 917702 | 33 (1.170) | 4 (0.160) | 4/224 | NT | 11.0% | intergenic (‑133/+66) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | = 917742 | 35 (1.360) | intergenic (‑173/+26) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
GGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCT > NC_002947/917554‑917851 | gggATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCggg < 1:684177/150‑1 (MQ=255) ggtgggCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTAccc > 2:152570/1‑150 (MQ=255) ggtgggCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTATACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTAccc > 1:657628/1‑150 (MQ=255) tgggCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCcgc > 1:556688/1‑150 (MQ=255) cATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAac > 2:580154/1‑150 (MQ=255) cTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGc < 2:341694/150‑1 (MQ=255) gggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTAc > 1:663874/1‑120 (MQ=255) gggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTAc < 2:663874/120‑1 (MQ=255) gggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg < 1:12696/150‑1 (MQ=255) ggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCggg > 2:496938/1‑150 (MQ=255) aTTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGttacccgcgaagaaggcttcgccggtgttcgcgggtaaacc > 2:207970‑M1/1‑109 (MQ=255) ggcggcgATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGttacccgcgaagaaggcttcgccggtgttcgcgggtaaacccgctcc < 1:207970‑M1/150‑48 (MQ=255) ggcgATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGttacccgcgaagaaggcttcgccggtgttcgcgggtaaacccgctcctac > 1:84346‑M1/1‑100 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGGAACAATTTGTGCGACAGCACCATGGAGTACGGGACTTTTCTAGTTGCCGTGGACCCTTGTAGGAGCGGGCCTACCCGCACACACCGGCGAACCCTTTTTCGCGGGTAACCGCTCTTACACt < 2:164048/150‑1 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACt > 1:306519/1‑150 (MQ=255) atatTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGttacccgcgaagaaggcttcgccggtgttcgcgggtaaacccgctcctacaagg < 2:84346‑M1/150‑55 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGgca < 1:296660/150‑1 (MQ=255) gggAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCaaa > 2:623460/1‑150 (MQ=255) ggAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAacac < 2:550816/103‑1 (MQ=255) ggAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAacac > 1:550816/1‑103 (MQ=255) ggCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg < 1:678847/116‑1 (MQ=255) ggCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg > 2:678847/1‑116 (MQ=255) gTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGt > 1:234426/1‑150 (MQ=255) gTCGGACAAATCTTGTCCGACGGAAGCACGGTGTACCGTACTTTTTGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGACAACCGCTCCGCCACTGGCAGCAAAAGAGCAGAACACGt > 2:195948/1‑150 (MQ=38) aaGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGTAGCAAAAGATCAGAACACGTTCAGTgg < 1:569848/150‑1 (MQ=255) tCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTAc < 1:540752/65‑1 (MQ=255) tCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTAc > 2:540752/1‑65 (MQ=255) gACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTAGGTAATcgacga > 2:332478/1‑150 (MQ=255) ggAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAATATCAGAACACGTTCAGTGGGTAATCGACGATTa < 1:623460/150‑1 (MQ=255) gCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGTCGATTAccca < 2:556688/150‑2 (MQ=255) cACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGaa < 1:266070/119‑1 (MQ=255) cACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGaa > 2:266070/1‑119 (MQ=255) tACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCAt > 2:407556/1‑150 (MQ=255) aCCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATc < 2:362549/150‑1 (MQ=255) gTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGtt < 1:472667/150‑1 (MQ=255) cTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTc < 1:580154/150‑1 (MQ=255) cTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTc < 1:152570/150‑1 (MQ=255) ccTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatat < 2:84346‑M2/150‑97 (MQ=255) gTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatatcgcc > 1:84346‑M2/1‑50 (MQ=255) ggAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatatcgccgcc < 1:207970‑M2/150‑104 (MQ=255) gAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAAccc > 1:446481/1‑150 (MQ=255) ggTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatatcgccgccgcgaat > 2:207970‑M2/1‑41 (MQ=255) | GGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCT > NC_002947/917554‑917851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |