New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 917702	33 (1.170)	4 (0.160)	4/224	NT	11.0%	intergenic (‑133/+66)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
	?	NC_002947	= 917742	35 (1.360)					intergenic (‑173/+26)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D

GATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGG  >  NC_002947/917606‑917888                                                                                                                                         |                                                                                                                                                   gATATTCTAGGGAAGCGGGCATTGTCGGGAACAATTTGTGCGACAGCACCATGGAGTACGGGACTTTTCTAGTTGCCGTGGACCCTTGTAGGAGCGGGCCTACCCGCACACACCGGCGAACCCTTTTTCGCGGGTAACCGCTCTTACACt                                                                                                                                       <  2:164048/150‑1 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACt                                                                                                                                       >  1:306519/1‑150 (MQ=255)     ttCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGgca                                                                                                                                   <  1:296660/150‑1 (MQ=255)          gggAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCaaa                                                                                                                              >  2:623460/1‑150 (MQ=255)                        gTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGt                                                                                                                >  1:234426/1‑150 (MQ=255)                        gTCGGACAAATCTTGTCCGACGGAAGCACGGTGTACCGTACTTTTTGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGACAACCGCTCCGCCACTGGCAGCAAAAGAGCAGAACACGt                                                                                                                >  2:195948/1‑150 (MQ=38)                               aaGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGTAGCAAAAGATCAGAACACGTTCAGTgg                                                                                                         <  1:569848/150‑1 (MQ=255)                                          gACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTAGGTAATcgacga                                                                                              >  2:332478/1‑150 (MQ=255)                                             ggAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAATATCAGAACACGTTCAGTGGGTAATCGACGATTa                                                                                           <  1:623460/150‑1 (MQ=255)                                                 gCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGTCGATTAccca                                                                                       <  2:556688/150‑2 (MQ=255)                                                  cACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGaa                                                                                                                     <  1:266070/119‑1 (MQ=255)                                                  cACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGaa                                                                                                                     >  2:266070/1‑119 (MQ=255)                                                         tACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCAt                                                                               >  2:407556/1‑150 (MQ=255)                                                          aCCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATc                                                                              <  2:362549/150‑1 (MQ=255)                                                             gTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGtt                                                                           <  1:472667/150‑1 (MQ=255)                                                                cTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTc                                                                        <  1:580154/150‑1 (MQ=255)                                                                cTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTc                                                                        <  1:152570/150‑1 (MQ=255)                                                                                    ccTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatat                                                    <  2:84346‑M2/150‑97 (MQ=255)                                                                                        gTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatatcgcc                                                >  1:84346‑M2/1‑50 (MQ=255)                                                                                           ggAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatatcgccgcc                                             <  1:207970‑M2/150‑104 (MQ=255)                                                                                            gAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAAccc                                            >  1:446481/1‑150 (MQ=255)                                                                                                 ggTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAAccgctcctacaagggtccacggcaaatcgaaaagtacggtacaccgtgcttccgtcggacaaatcttgtccgacaatgcccgcttccctagaatatcgccgccgcgaat                                       >  2:207970‑M2/1‑41 (MQ=255)                                                                                                       cccGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTg                                                                                                          >  1:416454/1‑77 (MQ=255)                                                                                                       cccGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTg                                                                                                          <  2:416454/77‑1 (MQ=255)                                                                                                       cccGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCcgcg                                 <  2:446481/150‑1 (MQ=255)                                                                                                       cccGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGATCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCcgcg                                 >  2:435104/1‑150 (MQ=255)                                                                                                          gcgAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCggtg                              >  1:12406/1‑150 (MQ=255)                                                                                                            gAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCggtggg                            <  2:12406/150‑1 (MQ=255)                                                                                                            gAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCggtgg                             <  2:622107/149‑1 (MQ=255)                                                                                                            gAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCggtgg                             >  1:622107/1‑149 (MQ=255)                                                                                                                acCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGtcga                                                          >  2:289690/1‑116 (MQ=255)                                                                                                                acCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGtcga                                                          <  1:289690/116‑1 (MQ=255)                                                                                                                  cGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATTGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCcg                                   >  2:245682/1‑137 (MQ=255)                                                                                                                  cGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCcg                                   <  1:245682/137‑1 (MQ=255)                                                                                                                   ggCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATa                     <  1:332478/150‑1 (MQ=255)                                                                                                                        aGCCTTCTTCGCGGGTAACCGCTCCGACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTa                <  2:306519/150‑1 (MQ=255)                                                                                                                          ccTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTTGGTGGCATAGCGTAcc              >  1:67539/1‑150 (MQ=255)                                                                                                                           aggcttcGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAAt                                                                                                    >  1:277514/4‑63 (MQ=255)                                                                                                                           aggcttcGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAAt                                                                                                    <  2:277514/60‑1 (MQ=255)                                                                                                                               ttcGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCAc         <  1:496938/150‑1 (MQ=255)                                                                                                                                   cgGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGAc     <  2:234426/150‑1 (MQ=255)                                                                                                                                      gTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAgg  <  1:407556/150‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                   GATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGG  >  NC_002947/917606‑917888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.