| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1434028 | 34 (1.210) | 6 (0.220) | 6/234 | NT | 14.9% | coding (363/1248 nt) | PP_1255 | cis‑4‑hydroxy‑D‑proline oxidase |
| ? | NC_002947 | = 1434082 | 36 (1.340) | coding (309/1248 nt) | PP_1255 | cis‑4‑hydroxy‑D‑proline oxidase | |||||
GTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAG > NC_002947/1433881‑1434174 | gTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAg > 1:43450/1‑150 (MQ=255) ggCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCt > 1:36045/1‑150 (MQ=255) gCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCtt > 1:538850/1‑150 (MQ=255) cGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGtt < 1:543462/150‑1 (MQ=255) ctgctgTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAg < 1:653243/150‑1 (MQ=255) gTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGc < 1:503194/150‑1 (MQ=255) ttGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCg < 1:306136/150‑1 (MQ=255) aTGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCggcgccgttccagcgcagcgtggcggg > 1:517979‑M1/1‑123 (MQ=255) gtgtGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCAAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGc < 2:707411/137‑1 (MQ=255) gtgtGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCAAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGc > 1:707411/1‑137 (MQ=255) tGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCggcgccgttccagcgcagcgtggcgggcatccgcacgctgaacgaaggcagc < 2:188731‑M1/148‑53 (MQ=255) tGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCggcgccgttccagcgcagcgtggcgggcatccgcacgctgaacgaaggcagc > 1:188731‑M1/1‑96 (MQ=255) tGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGcc > 2:183019/1‑150 (MQ=255) gTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggc < 1:116913‑M2/150‑5 (MQ=255) aCTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGcc < 2:75075/143‑1 (MQ=255) aCTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGcc > 1:75075/1‑143 (MQ=255) cTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCggcgccgttccagcgcagcgtggcgggcatccgcacgctgaacgaaggcagcctgggcgcct < 2:517979‑M1/150‑63 (MQ=255) tCAGGCTTCTCGCTCACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGAGCCTGCTGGCGCCACCTGGTTGGTGCCACGCGCCCAGGGTGCCTTCGTTCAGTGTGATGTTGCCCGCCACGTTGCGCTGGAACGGCGCCGGGCGCAgg < 1:733976/150‑1 (MQ=255) aGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCACCGCCCGATCGAGCCCAACCGCCGTCGCCAGGCGCCCAGACCGCCTTCGTCCCGCGTGCGTCTGCCCCCCACGCTACGCTGCGACGGCGACCGGCGCGGGtt > 2:308640/1‑150 (MQ=255) gCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGa > 2:453034/1‑150 (MQ=255) gCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGa > 1:561529/1‑150 (MQ=255) gCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGa > 1:276082/1‑150 (MQ=255) cTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGag < 2:116913/150‑1 (MQ=255) acacCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGcc > 1:431082/1‑150 (MQ=255) acCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCgg < 2:223393/150‑1 (MQ=255) ctaGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTTCCAGGCGCCCCGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCggg < 1:436000/148‑1 (MQ=255) cAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCATTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGt > 1:544849/1‑150 (MQ=255) gCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTTCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCCGGAGCTGCTCCGGGCGCAGGTTGAGCAGCAGCCGGGtag > 2:436000/1‑148 (MQ=255) aaCGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAAc < 1:453034/150‑1 (MQ=255) aTCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCggcgccgttccagcgcagcgtggcgggcatccgcacgctgaacgaaggcagcctg < 2:65007‑M1/113‑56 (MQ=255) aTCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCggcgccgttccagcgcagcgtggcgggcatccgcacgctgaacgaaggcagcctg > 1:65007‑M1/1‑58 (MQ=255) tctTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGcc > 2:619308/1‑150 (MQ=255) ttGAAACAACTCGCTGCGCCCCATCGAGCCGAACATCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCtt < 2:43450/150‑1 (MQ=255) acTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGt < 2:36045/150‑1 (MQ=255) cTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTa > 1:244468/1‑150 (MQ=255) cTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTtc < 2:544849/150‑1 (MQ=255) tCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCAt < 1:120642/121‑1 (MQ=255) tCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCAt > 2:120642/1‑121 (MQ=255) cccAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGc > 2:556148/1‑150 (MQ=255) ccAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGAGCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCg > 1:435492/1‑150 (MQ=255) aGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGCTGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGa < 2:435492/150‑1 (MQ=255) aGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggatggttcgttgctggtgttcgagaagcctgag < 2:517979‑M2/150‑89 (MQ=255) ggCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGag < 2:276082/150‑1 (MQ=255) cgcCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGagca < 1:263803/150‑1 (MQ=255) gcCCggcgccgttccagcgcagcgtggcgggcatccgcacgctgaacgaaggcagcctgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggatggttcgttgctggtgttcgagaagcctgagtcac < 1:116913‑M1/150‑147 (MQ=255) ccAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAg > 1:512904/1‑106 (MQ=255) ccAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAg < 2:512904/106‑1 (MQ=255) cAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggat < 2:65007‑M2/113‑59 (MQ=255) cAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggat > 1:65007‑M2/1‑55 (MQ=255) | GTCCACCGGCACCGCCTGCTGTTGCATGCGTGTGCGCAACGCCTCCAGCGCCTGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAG > NC_002947/1433881‑1434174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |