New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1434028	34 (1.210)	6 (0.220)	6/234	NT	14.9%	coding (363/1248 nt)	PP_1255	cis‑4‑hydroxy‑D‑proline oxidase
	?	NC_002947	= 1434082	36 (1.340)					coding (309/1248 nt)	PP_1255	cis‑4‑hydroxy‑D‑proline oxidase

TGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAGCATGCGAGGCAGGCGCTTGAGGATCGACAGGTCGGCAATCGGGA  >  NC_002947/1433933‑1434218                                                                                                                                                      |                                                                                                                                         tGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGcc                                                                                                                                          >  2:183019/1‑150 (MQ=255)     gTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggc                                                                                                                                      <  1:116913‑M2/150‑5 (MQ=255)        aCTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGcc                                                                                                                                          <  2:75075/143‑1 (MQ=255)        aCTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGcc                                                                                                                                          >  1:75075/1‑143 (MQ=255)          tCAGGCTTCTCGCTCACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGAGCCTGCTGGCGCCACCTGGTTGGTGCCACGCGCCCAGGGTGCCTTCGTTCAGTGTGATGTTGCCCGCCACGTTGCGCTGGAACGGCGCCGGGCGCAgg                                                                                                                                 <  1:733976/150‑1 (MQ=255)            aGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCACCGCCCGATCGAGCCCAACCGCCGTCGCCAGGCGCCCAGACCGCCTTCGTCCCGCGTGCGTCTGCCCCCCACGCTACGCTGCGACGGCGACCGGCGCGGGtt                                                                                                                               >  2:308640/1‑150 (MQ=255)              gCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGa                                                                                                                             >  2:453034/1‑150 (MQ=255)              gCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGa                                                                                                                             >  1:561529/1‑150 (MQ=255)              gCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGa                                                                                                                             >  1:276082/1‑150 (MQ=255)               cTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGag                                                                                                                            <  2:116913/150‑1 (MQ=255)                       acacCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGcc                                                                                                                    >  1:431082/1‑150 (MQ=255)                         acCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCgg                                                                                                                  <  2:223393/150‑1 (MQ=255)                          ctaGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTTCCAGGCGCCCCGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCggg                                                                                                                 <  1:436000/148‑1 (MQ=255)                           cAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCATTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGt                                                                                                                >  1:544849/1‑150 (MQ=255)                             gCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTTCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCCGGAGCTGCTCCGGGCGCAGGTTGAGCAGCAGCCGGGtag                                                                                                              >  2:436000/1‑148 (MQ=255)                               aaCGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAAc                                                                                                            <  1:453034/150‑1 (MQ=255)                                           tctTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGcc                                                                                                >  2:619308/1‑150 (MQ=255)                                             ttGAAACAACTCGCTGCGCCCCATCGAGCCGAACATCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCtt                                                                                              <  2:43450/150‑1 (MQ=255)                                                     acTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGt                                                                                      <  2:36045/150‑1 (MQ=255)                                                      cTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTa                                                                                     >  1:244468/1‑150 (MQ=255)                                                          cTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTtc                                                                                 <  2:544849/150‑1 (MQ=255)                                                                    tCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCAt                                                                                                    >  2:120642/1‑121 (MQ=255)                                                                    tCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCAt                                                                                                    <  1:120642/121‑1 (MQ=255)                                                                         cccAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGc                                                                  >  2:556148/1‑150 (MQ=255)                                                                          ccAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGAGCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCg                                                                 >  1:435492/1‑150 (MQ=255)                                                                                         aGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGCTGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGa                                                  <  2:435492/150‑1 (MQ=255)                                                                                         aGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggatggttcgttgctggtgttcgagaagcctgag                                                  <  2:517979‑M2/150‑89 (MQ=255)                                                                                          ggCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGag                                                 <  2:276082/150‑1 (MQ=255)                                                                                            cgcCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGagca                                               <  1:263803/150‑1 (MQ=255)                                                                                               ccAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAg                                                                                        >  1:512904/1‑106 (MQ=255)                                                                                               ccAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAg                                                                                        <  2:512904/106‑1 (MQ=255)                                                                                                cAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggat                                                                                >  1:65007‑M2/1‑55 (MQ=255)                                                                                                cAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggat                                                                                <  2:65007‑M2/113‑59 (MQ=255)                                                                                                   gCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggatggttcgttgctggtgttcgagaagcctgagtcacgcca                                          <  2:188731‑M2/148‑97 (MQ=255)                                                                                                   gCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggatggttcgttgctggtgttcgagaagcctgagtcacgcca                                          >  1:188731‑M2/1‑52 (MQ=255)                                                                                                         ttCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAgg                                                                                       <  2:678405/97‑1 (MQ=255)                                                                                                         ttCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAgg                                                                                       >  1:678405/1‑97 (MQ=255)                                                                                                             ttCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGTCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAGCATGCGAGGCAGgcgc                              <  1:308640/150‑1 (MQ=255)                                                                                                                   gTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGTGTGAACCACGGCATg                                                                                                   >  1:52018/1‑75 (MQ=255)                                                                                                                   gTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATg                                                                                                   <  2:52018/75‑1 (MQ=255)                                                                                                                            cccGCCACGCTGCGCTGGAACGGCGCCgggcgcctggcaacggctgttgggctcgatcgggcgcagcgagttgtttcaagaggatggttcgttgctggtgttcgagaagcctgagtcacgccaggcgctggaggcgttgcgcacacgcat               >  1:517979‑M2/1‑27 (MQ=255)                                                                                                                             ccGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTg                                                                                             >  1:351416/1‑71 (MQ=255)                                                                                                                             ccGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTg                                                                                             <  2:351416/71‑1 (MQ=255)                                                                                                                               gCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTtcca                                                                               <  2:622680/83‑1 (MQ=255)                                                                                                                               gCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTtcca                                                                               >  1:622680/1‑83 (MQ=255)                                                                                                                               gCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAGCATGCGAGGCAGGCGCTTGAGGATCGACAGGTCg            <  1:297753/150‑1 (MQ=255)                                                                                                                               gCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGCGTGAAAAACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAGCATGCGAGGCAGGCGCTTGAGGATCGACAGGTCg            <  2:648607/150‑1 (MQ=255)                                                                                                                                         gctgGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAGCATGCGAGGCAGGCGCTTGAGGATCGACAGGTCGGCAATCGGGa  <  2:431082/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                         TGGCGTGACTCAGGCTTCTCGAACACCAGCAACGAACCATCCTCTTGAAACAACTCGCTGCGCCCGATCGAGCCCAACAGCCGTTGCCAGGCGCCCAGGCTGCCTTCGTTCAGCGTGCGGATGCCCGCCACGCTGCGCTGGAACGGCGCCGGGCGCAGGTTGAGCAGCAGCCGGGTGAACCACGGCATGGCCTTGGGCAGGTACTTCCAGTCCAGGCGCAGCGGGCCCATCGGGTCGAGCAGCATGCGAGGCAGGCGCTTGAGGATCGACAGGTCGGCAATCGGGA  >  NC_002947/1433933‑1434218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.