New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2074570 =	38 (1.350)	4 (0.150)	4/232	NT	10.4%	coding (852/1188 nt)	ygaY	transporter YgaY
	?	NC_002947	2074592 =	33 (1.240)					coding (830/1188 nt)	ygaY	transporter YgaY

TGCGTGCCTCGGGCCGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCCAGCA  >  NC_002947/2074425‑2074718                                                                                                                                                  |                                                                                                                                                      tgcgtgcCTCGGGCCGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAAcacca                                                                                                                                                   <  1:36610/150‑1 (MQ=255)    gtgcCTCGGGCCGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACAccacca                                                                                                                                                >  2:469236/1‑150 (MQ=255)        cTCGGGCCGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGcc                                                                                                                                           >  2:331449/1‑150 (MQ=255)         tCGGGCCGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCCGCACTACCAGCAGCAAGGACAGCAGCGCCTGTTCGGCAGACCGCTGCTGCACCCACGACAGCAGCAACACCACCA‑GGccc                                                                                                                                          >  1:355562/1‑150 (MQ=255)               cGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACggtg                                                                                                                                    <  2:467748/150‑1 (MQ=255)                   gggCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGc                                                                                                                                >  1:488283/1‑150 (MQ=255)                      tggcgaatggcccctatcactattcggatgcggtgatcggcctgttcggcctggccggtgcggcgggtgcgttgtcggccaactgggccggacgcctggcggaccgtggcaaggggtcgctggaCACCACCA‑GGCCCACGGTGGTGCCCa                                                                                                                             >  1:670296‑M1/125‑150 (MQ=255)                      cGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCa                                                                                                                             <  2:83414/150‑1 (MQ=255)                      cGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCa                                                                                                                             <  2:488283/150‑1 (MQ=255)                          cACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGa                                                                                                                         <  1:469236/150‑1 (MQ=255)                                    tGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCTAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCa                                                                                                               >  1:176422/1‑150 (MQ=255)                                                  cACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCAAGCGACCCCTTGCCACGGTCCGCCAGGCg                                                                                                 >  1:43951/1‑150 (MQ=255)                                                          gTACCGCCAGGTCTAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGccc                                                                                         <  2:176422/150‑1 (MQ=255)                                                              cGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGcc                                                                                                      >  1:30172/1‑133 (MQ=255)                                                              cGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTGGCCACGGTCCGcc                                                                                                      <  2:30172/133‑1 (MQ=255)                                                                       gAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACaa                                                                            >  1:44110/1‑150 (MQ=255)                                                                        aGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAAc                                                                           <  1:649708/150‑1 (MQ=255)                                                                        aGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAAc                                                                           >  1:270294/1‑150 (MQ=255)                                                                            tCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCAc                                                                       >  1:522284/1‑150 (MQ=255)                                                                                     ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCATCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGAccc                                                                                                                      >  1:391156/1‑94 (MQ=255)                                                                                     ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCATCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGAccc                                                                                                                      <  2:391156/94‑1 (MQ=255)                                                                                     ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCAc                                                              >  1:346388/1‑150 (MQ=255)                                                                                     ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCAc                                                              <  2:277692/150‑1 (MQ=255)                                                                                           gcaAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCa                                                        >  2:537351/1‑150 (MQ=255)                                                                                           gcaAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTCGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGcc                                                                                 <  2:96703/125‑1 (MQ=255)                                                                                           gcaAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTCGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGcc                                                                                 >  1:96703/1‑125 (MQ=255)                                                                                             aaGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAgg                                                      >  2:559686/1‑150 (MQ=255)                                                                                                          aCTGTTCGACAAACCCCAGCGGCACCCAGGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGa                                         >  2:218126/1‑150 (MQ=255)                                                                                                            tGTTCGGCCAGCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATc                                       <  1:32207/150‑1 (MQ=255)                                                                                                            tGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAg                                                                                                    >  1:80162/1‑89 (MQ=255)                                                                                                            tGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAg                                                                                                    <  2:80162/89‑1 (MQ=255)                                                                                                             ccggacgcctggcggaccgtggcaaggggtcgctgggCACCACCA‑GGCCCACGGTGGTGccc                                                                                                                              <  2:302107‑M1/25‑1 (MQ=255)                                                                                                             ccggacgcctggcggaccgtggcaaggggtcgctgggCACCACCA‑GGCCCACGGTGGTGccc                                                                                                                              >  1:302107‑M1/38‑62 (MQ=255)                                                                                                                    aaaCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGAACAATTAGGCAACAAGCCACCCCCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATc                               >  2:209710/1‑150 (MQ=255)                                                                                                                    aaaCCCCAGCGCCACCCACGACAGCCGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTTCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACCCACCCCCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATc                               <  2:355562/150‑1 (MQ=255)                                                                                                                      aCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCAccc                                                                     >  1:102420/1‑110 (MQ=255)                                                                                                                      aCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCAccc                                                                     <  2:102420/110‑1 (MQ=255)                                                                                                                        cccAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGaa                           >  1:669616/1‑150 (MQ=255)                                                                                                                         ccAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACAGGCCAGGCCGAACAGGCCGATCACCGCATCCGAAt                          >  2:443863/1‑150 (MQ=255)                                                                                                                            gCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACAGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGt                       <  1:443863/150‑1 (MQ=255)                                                                                                                                tggcaaggggtcgctgggCACCACCGTGGGCCT‑GGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATa                   <  2:488544‑M1/132‑1 (MQ=255)                                                                                                                                    cACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGAACCCGCGTGACGGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAgggg               >  2:512131/1‑150 (MQ=255)                                                                                                                                          agcagcAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTc         <  1:331449/150‑1 (MQ=255)                                                                                                                                                 acacCACCA‑GGCCCACGGTGGCGCCAAGCGTCCCCTTTCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACACCGCATCTGCCGCACTGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATATTTATAGGGGCTATTCGCcagca  <  2:43951/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TGCGTGCCTCGGGCCGCAGGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCCAGCA  >  NC_002947/2074425‑2074718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.