| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2074570 = | 38 (1.350) | 4 (0.150) | 4/232 | NT | 10.4% | coding (852/1188 nt) | ygaY | transporter YgaY |
| ? | NC_002947 | 2074592 = | 33 (1.240) | coding (830/1188 nt) | ygaY | transporter YgaY | |||||
GGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCCAGCAGAAACGCCAG > NC_002947/2074443‑2074728 | gggCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGc > 1:488283/1‑150 (MQ=255) tggcgaatggcccctatcactattcggatgcggtgatcggcctgttcggcctggccggtgcggcgggtgcgttgtcggccaactgggccggacgcctggcggaccgtggcaaggggtcgctggaCACCACCA‑GGCCCACGGTGGTGCCCa > 1:670296‑M1/125‑150 (MQ=255) cGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCa < 2:83414/150‑1 (MQ=255) cGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCa < 2:488283/150‑1 (MQ=255) cACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGa < 1:469236/150‑1 (MQ=255) tGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCTAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCa > 1:176422/1‑150 (MQ=255) tatcactattcggatgcggtgatcggcctgttcggcctggccggtgcggcgggtgcgttgtcggccaactgggccggacgcctggcggaccgtggcaaggggtcgctgggcaccaccaggcccacggtggtgCCCAGCGACCCCTTGCCa < 2:488544‑M2/18‑1 (MQ=255) cACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCAAGCGACCCCTTGCCACGGTCCGCCAGGCg > 1:43951/1‑150 (MQ=255) gTACCGCCAGGTCTAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGccc < 2:176422/150‑1 (MQ=255) cGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGcc > 1:30172/1‑133 (MQ=255) cGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTGGCCACGGTCCGcc < 2:30172/133‑1 (MQ=255) gAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACaa > 1:44110/1‑150 (MQ=255) aGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAAc < 1:649708/150‑1 (MQ=255) aGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAAc > 1:270294/1‑150 (MQ=255) tCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCAc > 1:522284/1‑150 (MQ=255) ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCATCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGAccc < 2:391156/94‑1 (MQ=255) ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCATCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGAccc > 1:391156/1‑94 (MQ=255) ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCAc > 1:346388/1‑150 (MQ=255) ccAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCAc < 2:277692/150‑1 (MQ=255) gcaAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCa > 2:537351/1‑150 (MQ=255) gcaAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTCGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGcc < 2:96703/125‑1 (MQ=255) gcaAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTCGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGcc > 1:96703/1‑125 (MQ=255) aaGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAgg > 2:559686/1‑150 (MQ=255) aCTGTTCGACAAACCCCAGCGGCACCCAGGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGa > 2:218126/1‑150 (MQ=255) tGTTCGGCCAGCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATc < 1:32207/150‑1 (MQ=255) tGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAg < 2:80162/89‑1 (MQ=255) tGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAg > 1:80162/1‑89 (MQ=255) ccggacgcctggcggaccgtggcaaggggtcgctgggCACCACCA‑GGCCCACGGTGGTGccc > 1:302107‑M1/38‑62 (MQ=255) ccggacgcctggcggaccgtggcaaggggtcgctgggCACCACCA‑GGCCCACGGTGGTGccc < 2:302107‑M1/25‑1 (MQ=255) aaaCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGAACAATTAGGCAACAAGCCACCCCCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATc > 2:209710/1‑150 (MQ=255) aaaCCCCAGCGCCACCCACGACAGCCGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTTCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACCCACCCCCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATc < 2:355562/150‑1 (MQ=255) aCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCAccc > 1:102420/1‑110 (MQ=255) aCCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCAccc < 2:102420/110‑1 (MQ=255) cccAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGaa > 1:669616/1‑150 (MQ=255) ccAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACAGGCCAGGCCGAACAGGCCGATCACCGCATCCGAAt > 2:443863/1‑150 (MQ=255) gCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACAGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGt < 1:443863/150‑1 (MQ=255) tggcaaggggtcgctgggCACCACCGTGGGCCT‑GGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATa < 2:488544‑M1/132‑1 (MQ=255) cACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGAACCCGCGTGACGGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAgggg > 2:512131/1‑150 (MQ=255) agcagcAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTc < 1:331449/150‑1 (MQ=255) tgggcaccaccgtgggcctggtggtgTCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCca > 1:670296‑M2/27‑150 (MQ=255) gggcaccaccgtgggcctggtggtgCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCgg < 2:302107‑M2/37‑1 (MQ=255) gggcaccaccgtgggcctggtggtgCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCgg > 1:302107‑M2/26‑62 (MQ=255) acacCACCA‑GGCCCACGGTGGCGCCAAGCGTCCCCTTTCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACACCGCATCTGCCGCACTGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATATTTATAGGGGCTATTCGCcagca < 2:43951/150‑1 (MQ=255) ACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCCAGCAGa < 1:76110‑M1/150‑1 (MQ=255) CCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCca > 2:521436‑M1/1‑141 (MQ=255) CCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCca < 1:521436‑M1/141‑1 (MQ=255) gCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCCAGCAGAAACGCCAg < 2:522284/150‑1 (MQ=255) | GGGCGATCACCGCGTTCTGGTTGCTCACATGCACCAGTTGTACCGCCAGGTCGAGCATCAGCACGCCCAGCAGCAAGGCGAGCAGCGACTGTTCGGCAAACCCCAGCGGCACCCACGACAGCAGCAACACCACCA‑GGCCCACGGTGGTGCCCAGCGACCCCTTGCCACGGTCCGCCAGGCGTCCGGCCCAGTTGGCCGACAACGCACCCGCCGCACCGGCCAGGCCGAACAGGCCGATCACCGCATCCGAATAGTGATAGGGGCCATTCGCCAGCAGAAACGCCAG > NC_002947/2074443‑2074728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |