New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2723194	19 (0.670)	4 (0.150)	4/232	NT	17.8%	coding (441/846 nt)	PP_2383	AraC family transcriptional regulator
	?	NC_002947	= 2723215	19 (0.720)					coding (420/846 nt)	PP_2383	AraC family transcriptional regulator

GCCAGTTGGCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCGG  >  NC_002947/2723075‑2723342                                                                                                                        |                                                                                                                                                     gCCAGTTGGCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGgcgctggcgctg                                                                                                                        >  2:516222/1‑150 (MQ=255)         gCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCAGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGa                                                                                                                >  2:632020/1‑150 (MQ=255)            ttCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACaa                                                                                                             <  2:661120/150‑1 (MQ=255)               cagcagTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGc                                                                                                                                                    <  2:662908/108‑1 (MQ=255)               cagcagTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGc                                                                                                                                                    >  1:662908/1‑108 (MQ=255)                                   cTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGa                                                                                      <  1:201924/150‑1 (MQ=255)                                    tACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGACCAGCACCGCCTGGCGCTAGGCCGTCTAATGATGCATAGCGTCGGGGCTGTCGTCGGACAGCTGTTGCAGCTGGCTGAACGCGat                                                                                     <  2:274217/150‑2 (MQ=255)                                        gCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGagggcc                                                                                 >  2:402647/1‑150 (MQ=255)                                             gggTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGagggccagggc                                                                            >  2:162097/1‑150 (MQ=255)                                                   gTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGcgccttgcagcagcagacggcctggc                                                                                                                            <  2:272633‑M1/96‑27 (MQ=255)                                                   gTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGcgccttgcagcagcagacggcctggc                                                                                                                            >  1:272633‑M1/1‑70 (MQ=255)                                                   gTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTc                                                                      >  2:512924/1‑150 (MQ=255)                                                    tGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGcgccttgcagcagcagacggcctggcgcca                                                                                                                        >  1:708298‑M1/1‑69 (MQ=255)                                                    tGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGcgccttgcagcagcagacggcctggcgcca                                                                                                                        <  2:708298‑M1/99‑31 (MQ=255)                                                    tGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCa                                                                     >  1:666379/1‑150 (MQ=255)                                                                        ggCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGaa                                                 >  2:185888/1‑150 (MQ=255)                                                                                        cGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACg                                                            >  2:420267/1‑123 (MQ=255)                                                                                        cGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACg                                                            <  1:420267/123‑1 (MQ=255)                                                                                         gCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTggc                                >  1:83262/1‑150 (MQ=255)                                                                                              aCCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGccc                           >  1:514279/1‑150 (MQ=255)                                                                                                cAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAggcgctggcgct                                                                                                                         <  1:482771/54‑1 (MQ=255)                                                                                                cAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAggcgctggcgct                                                                                                                         >  2:482771/1‑54 (MQ=255)                                                                                                  gggCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCccagtt                       <  1:162097/150‑1 (MQ=255)                                                                                                  gggCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCccagtt                       >  1:254467/1‑150 (MQ=255)                                                                                                           ccGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGt              <  1:512924/150‑1 (MQ=255)                                                                                                                tGGCGCCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggcca                                                            >  1:708298‑M2/1‑30 (MQ=255)                                                                                                                tGGCGCCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggcca                                                            <  2:708298‑M2/99‑70 (MQ=255)                                                                                                                    gcCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggccac                                                           >  1:272633‑M2/1‑26 (MQ=255)                                                                                                                    gcCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggccac                                                           <  2:272633‑M2/96‑71 (MQ=255)                                                                                                                       aGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCgg  <  2:630243/150‑1 (MQ=255)                                                                                                                       aGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCgg  >  1:491823/1‑150 (MQ=255)                                                                                                                        |                                                                                                                                                     GCCAGTTGGCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCGG  >  NC_002947/2723075‑2723342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.