| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2723194 | 19 (0.670) | 4 (0.150) | 4/232 | NT | 17.8% | coding (441/846 nt) | PP_2383 | AraC family transcriptional regulator |
| ? | NC_002947 | = 2723215 | 19 (0.720) | coding (420/846 nt) | PP_2383 | AraC family transcriptional regulator | |||||
GCCAGTTGGCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCGGTCACCCGCTCGTGCTCGG > NC_002947/2723075‑2723360 | gCCAGTTGGCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGgcgctggcgctg > 2:516222/1‑150 (MQ=255) gCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCAGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGa > 2:632020/1‑150 (MQ=255) ttCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACaa < 2:661120/150‑1 (MQ=255) cTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGa < 1:201924/150‑1 (MQ=255) tACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGACCAGCACCGCCTGGCGCTAGGCCGTCTAATGATGCATAGCGTCGGGGCTGTCGTCGGACAGCTGTTGCAGCTGGCTGAACGCGat < 2:274217/150‑2 (MQ=255) gCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGagggcc > 2:402647/1‑150 (MQ=255) gggTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGagggccagggc > 2:162097/1‑150 (MQ=255) gTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTc > 2:512924/1‑150 (MQ=255) tGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCa > 1:666379/1‑150 (MQ=255) ggCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGaa > 2:185888/1‑150 (MQ=255) cGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACg < 1:420267/123‑1 (MQ=255) cGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACg > 2:420267/1‑123 (MQ=255) gCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTggc > 1:83262/1‑150 (MQ=255) aCCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGccc > 1:514279/1‑150 (MQ=255) cAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAggcgctggcgct < 1:482771/54‑1 (MQ=255) cAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAggcgctggcgct > 2:482771/1‑54 (MQ=255) gggCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCccagtt < 1:162097/150‑1 (MQ=255) gggCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCccagtt > 1:254467/1‑150 (MQ=255) ccGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGt < 1:512924/150‑1 (MQ=255) tGGCGCCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggcca > 1:708298‑M2/1‑30 (MQ=255) tGGCGCCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggcca < 2:708298‑M2/99‑70 (MQ=255) gcCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggccac < 2:272633‑M2/96‑71 (MQ=255) gcCAGGCCGTCTGCTGCTGCAAGGCGctggcgccaggcggtgctggccctggtgcagcggcacgggcagtgcgccgagccttcggcccctggccac > 1:272633‑M2/1‑26 (MQ=255) aGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCgg > 1:491823/1‑150 (MQ=255) aGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCgg < 2:630243/150‑1 (MQ=255) aaGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGCTAGTGCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCGGTCACCCGCTCGTGCTCg < 2:666379/150‑1 (MQ=255) aGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCGGTCACCCGCTCGTGCTCgg < 1:516222/150‑1 (MQ=255) | GCCAGTTGGCTTTCCAGCAGTTCGCGGGCGCGGGCTACGGCCAGGGGTTCGTGGCCAGGGGCCGAAGGCTCGGCGCACTGCCCGTGCCGCTGCACCAGGGCCAGCACCGCCTGGCGCCAGGCCGTCTGCTGCTGCAAGGCGCTGGCGCTGGCTTCGGACAACTGATGCAGCTGGCTGAACGCGAGGGCCAGGGCCGGGTCATGGATCACGCTGTCCTTGAAGCTGGGCATGCCGTGGCGGCCCAGTTCCAGTTCGTCAAGCACACCGGTCACCCGCTCGTGCTCGG > NC_002947/2723075‑2723360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |