New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2732251	23 (0.820)	4 (0.150)	4/234	NT	14.8%	coding (1545/2361 nt)	polB	DNA polymerase II
	?	NC_002947	= 2732271	24 (0.900)					coding (1565/2361 nt)	polB	DNA polymerase II

AGCCATCGTCGAACGGGTGTGGCAGGGCAGGGAAGCGGCCAAGCGCGAGGGCAATGCGCCGCTGTCGCAGGCCTTGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCTGGCTCAAGGGTGCCCACGCCGAGGAA  >  NC_002947/2732110‑2732389                                                                                                                                              |                                                                                                                                            agccaTCGTCGAACGGGTGTGGCAGGGCAGGGAAGCGGCCAAGCGCGAGGGCAATGCGCCGCTGTCGCAGGCCTTGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGcg‑tc                                                                                                                                    >  1:119536/1‑150 (MQ=255)                                        cAAGCGCGAGGGCAATGCGCCGCTGTCGCAGGCCTTGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCATGGTGATCGACGA‑CGCCAGgcgcgggtcgaa                                                                                                            <  2:399101‑M2/135‑13 (MQ=255)                                        cAAGCGCGAGGGCAATGCGCCGCTGTCGCAGGCCTTGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCATGGTGATCGACGA‑CGCCAGgcgcgggtcgaa                                                                                                            >  1:399101‑M2/1‑123 (MQ=255)                                                                   gCAGGCCTTGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTa                                                                  <  2:119536/150‑1 (MQ=255)                                                                          ttGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGcc                                                                                                 >  1:444421/1‑112 (MQ=255)                                                                          ttGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGcc                                                                                                 <  2:444421/112‑1 (MQ=255)                                                                          ttGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGAtgtg                                                           >  1:732816/1‑150 (MQ=255)                                                                          ttGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGAtgtg                                                           >  2:509221/1‑150 (MQ=255)                                                                                 tcatcaTGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACg                                                    <  1:509221/150‑1 (MQ=255)                                                                                   atcatGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCatggtgatcgacgacgccaggcgcgg                                                                                                                   >  2:518357‑M1/1‑60 (MQ=255)                                                                                   atcatGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCatggtgatcgacgacgccaggcgcgg                                                                                                                   <  1:518357‑M1/86‑27 (MQ=255)                                                                                      atGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGac                                               >  2:673787/1‑150 (MQ=255)                                                                                              cTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGccacca                                                                                                            <  2:53442/81‑1 (MQ=255)                                                                                              cTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAg                                                                             >  1:21540/1‑112 (MQ=255)                                                                                              cTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAg                                                                             <  2:21540/112‑1 (MQ=255)                                                                                              cTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTc                                       >  2:508756/1‑150 (MQ=255)                                                                                              cTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑GCGTCGATCACCATGCGCGGccacca                                                                                                            >  1:53442/1‑81 (MQ=255)                                                                                               ttttATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGAtgt                                                            >  1:199135/1‑128 (MQ=255)                                                                                               ttttATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGAtgt                                                            <  2:199135/128‑1 (MQ=255)                                                                                               ttttATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTcc                                      >  1:68257/1‑150 (MQ=255)                                                                                                         tGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCt                            <  2:68257/150‑1 (MQ=255)                                                                                                                cTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCTGGCTCaa                     >  2:414537/1‑150 (MQ=255)                                                                                                                  ccAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCTGGCTCAAgg                   <  1:673787/150‑1 (MQ=255)                                                                                                                                  cttcGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCTGGCTCAAGGGTGCCCACGCCGAGGa   <  1:238995/150‑1 (MQ=255)                                                                                                                                   ttcGACCCGTGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATTCGCCAAACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCTGGCTCAAGGGTGCCCACGCCGAGGaa  >  2:47753/1‑150 (MQ=255)                                                                                                                                   ttcGACCCGCGCctggcgtcgtcgatcaccatgcgcgggtcgaagaaacggcaaccgctggagccaagcacgccataaaaggcattcatgatgattttcaaggcctgcgacagcggcgcattgccctcgcgcttg                  <  2:399101‑M1/135‑124 (MQ=255)                                                                                                                                   ttcGACCCGCGCctggcgtcgtcgatcaccatgcgcgggtcgaagaaacggcaaccgctggagccaagcacgccataaaaggcattcatgatgattttcaaggcctgcgacagcggcgcattgccctcgcgcttg                  >  1:399101‑M1/1‑12 (MQ=255)                                                                                                                                   ttcGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCtt                                 <  2:603742/119‑1 (MQ=255)                                                                                                                                   ttcGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACGCCACCtt                                 >  1:603742/1‑119 (MQ=255)                                                                                                                                         ccGCGCCTGGCG‑TCGTCGATCACCATgcgcgggtcgaagaaacggcaaccgctggagccaagcacgccataaaaggcattcatgat                                                            <  1:518357‑M2/86‑61 (MQ=255)                                                                                                                                         ccGCGCCTGGCG‑TCGTCGATCACCATgcgcgggtcgaagaaacggcaaccgctggagccaagcacgccataaaaggcattcatgat                                                            >  2:518357‑M2/1‑26 (MQ=255)                                                                                                                                              |                                                                                                                                            AGCCATCGTCGAACGGGTGTGGCAGGGCAGGGAAGCGGCCAAGCGCGAGGGCAATGCGCCGCTGTCGCAGGCCTTGAAAATCATCATGAATGCCTTTTATGGCGTGCTTGGCTCCAGCGGTTGCCGTTTCTTCGACCCGCGCCTGGCG‑TCGTCGATCACCATGCGCGGCCACCAGATCATGCGCCAGACCAGGTCCCTGATCGAGGCGTGTGGCTACGATGTGATCTACGGTGACACCGACTCCACCTTTGTCTGGCTCAAGGGTGCCCACGCCGAGGAA  >  NC_002947/2732110‑2732389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.