New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2770084	26 (0.920)	3 (0.110)	3/234	NT	10.0%	coding (94/354 nt)	PP_2422	hypothetical protein
	?	NC_002947	= 2770120	29 (1.080)					coding (58/354 nt)	PP_2422	hypothetical protein

CCCCGCTTTGACGGCCTGCTGCGAATGCACGGCGATGCAGCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCG  >  NC_002947/2769938‑2770228                                                                                                                                                   |                                                                                                                                                 ccccGCTTTGACGGCCTGCTGCGAATGCACGGCGATGCAGCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTAc                                                                                                                                               <  1:59129/150‑1 (MQ=255)  cccGCTTTGACGGCCTGCTGCGAATGCACGGCGATGCAGCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACg                                                                                                                                              >  2:640966/1‑150 (MQ=255)                      cGAATGCACGGCGATGCAGCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCtt                                                                                                                          <  1:640966/150‑1 (MQ=255)                             aCGGCGATGCAGCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTGGGGGGAGAGTTGCTTGAGATCg                                                                                                                   >  1:16001/1‑150 (MQ=255)                                  gATGCAGCCGTCGCAGCGGGTGGTCACAGCAACGGCCAAGGAGATCAGCTCGCGGGTATTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTAAGGTGTCGGGGGAGAGTTGATGGAGATCGCTGag                                                                                                              >  1:294476/1‑149 (MQ=255)                                        gCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCatcggcgatctcaagcaactctcccccgacaccgtagccggc                                                                                                        <  1:121862‑M1/150‑43 (MQ=255)                                          cGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCatcggcgatctcaagcaactctcccccgacaccgtagccggcta                                                                                                      >  1:445189‑M1/1‑106 (MQ=255)                                             cGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCatcggcgatctcaagcaactctcccccgacaccgtagccggctacat                                                                                                   <  2:445189‑M1/150‑48 (MQ=255)                                                      tggtCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCGGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTAc                                                                                          >  1:478570/1‑150 (MQ=255)                                                           acaGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGATGCTTGAGATCGCCGATGCCGGCCACTACCTGCTTACGGTaa                                                                                     >  2:248118/1‑149 (MQ=255)                                                                   ggCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGCGATATGGGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCa                                                                             <  2:558683/150‑1 (MQ=255)                                                                       aaGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTcc                                                                               >  2:604288/1‑144 (MQ=255)                                                                       aaGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTcc                                                                               <  1:604288/144‑1 (MQ=255)                                                                            gaTCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGCCGTTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAAATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCcatcat                                                                    <  1:324398/150‑1 (MQ=255)                                                                                 gCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggc                                                                                                        <  2:706757‑M2/109‑7 (MQ=255)                                                                                 gCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggc                                                                                                        >  1:706757‑M2/1‑103 (MQ=255)                                                                                     gcgGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGt                                                           >  2:674407/1‑150 (MQ=255)                                                                                          tCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCa                                                      >  2:534156/1‑150 (MQ=255)                                                                                                 aTCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTc                                                                          >  1:513120/1‑123 (MQ=255)                                                                                                 aTCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTc                                                                          <  2:513120/123‑1 (MQ=255)                                                                                                  tCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATTCCGGCCATTAACt                                                                                                <  1:527706/100‑1 (MQ=255)                                                                                                  tCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATTCCGGCCATTAACt                                                                                                >  2:527706/1‑100 (MQ=255)                                                                                                             ggtCTTGGCCCCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTgg                                   <  2:16001/150‑1 (MQ=255)                                                                                                               tCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACgg                                                                                        <  1:373220/95‑1 (MQ=255)                                                                                                               tCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACgg                                                                                        >  2:373220/1‑95 (MQ=255)                                                                                                                     cACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGTTTGCGCGTGGGGCTTTCa                           >  1:86055/1‑150 (MQ=255)                                                                                                                      aCCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCtt                                                        <  2:128479/120‑1 (MQ=255)                                                                                                                      aCCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCtt                                                        >  1:128479/1‑120 (MQ=255)                                                                                                                          gCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTa                      <  1:674407/150‑1 (MQ=255)                                                                                                                                     ggTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGAGCGCCGAGGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTg           <  2:73809/150‑1 (MQ=255)                                                                                                                                       tCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGc         <  1:534156/150‑1 (MQ=255)                                                                                                                                         aTGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagctgatctccttggccgtggctgtgaccacccgctgcg       <  2:445189‑M2/150‑104 (MQ=255)                                                                                                                                         aTGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGt            <  1:689559/145‑1 (MQ=255)                                                                                                                                         aTGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGt            >  2:689559/1‑145 (MQ=255)                                                                                                                                            tAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagctgatctccttggccgtggctgtgaccacccgctgcgacg    >  1:445189‑M2/1‑44 (MQ=255)                                                                                                                                              gCCGGCatcggcgatctcaagcaactctcccccgacaccgtagccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagc                                           >  1:706757‑M1/1‑6 (MQ=255)                                                                                                                                              gCCGGCatcggcgatctcaagcaactctcccccgacaccgtagccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagc                                           <  2:706757‑M1/109‑104 (MQ=255)                                                                                                                                              gCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagctgatctccttggccgtggctgtgaccacccgctgcgacggc  <  1:121862‑M2/150‑109 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CCCCGCTTTGACGGCCTGCTGCGAATGCACGGCGATGCAGCCGTCGCAGCGGGTGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCG  >  NC_002947/2769938‑2770228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.