New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2770084	26 (0.920)	3 (0.110)	3/234	NT	10.0%	coding (94/354 nt)	PP_2422	hypothetical protein
	?	NC_002947	= 2770120	29 (1.080)					coding (58/354 nt)	PP_2422	hypothetical protein

TGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCGAGGCGGTACTTTGGTGGGTAAACGCAGGTCACTC  >  NC_002947/2769991‑2770262                                                                                                                                  |                                                                                                                                               tggtCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCGGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTAc                                                                                                                            >  1:478570/1‑150 (MQ=255)      acaGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGATGCTTGAGATCGCCGATGCCGGCCACTACCTGCTTACGGTaa                                                                                                                       >  2:248118/1‑149 (MQ=255)              ggCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGCGATATGGGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCa                                                                                                               <  2:558683/150‑1 (MQ=255)                  aaGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTcc                                                                                                                 >  2:604288/1‑144 (MQ=255)                  aaGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTcc                                                                                                                 <  1:604288/144‑1 (MQ=255)                       gaTCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGCCGTTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAAATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCcatcat                                                                                                      <  1:324398/150‑1 (MQ=255)                            gCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggc                                                                                                                                          <  2:706757‑M2/109‑7 (MQ=255)                            gCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggc                                                                                                                                          >  1:706757‑M2/1‑103 (MQ=255)                                gcgGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGt                                                                                             >  2:674407/1‑150 (MQ=255)                                     tCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCa                                                                                        >  2:534156/1‑150 (MQ=255)                                            aTCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTc                                                                                                            >  1:513120/1‑123 (MQ=255)                                            aTCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTc                                                                                                            <  2:513120/123‑1 (MQ=255)                                             tCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATTCCGGCCATTAACt                                                                                                                                  <  1:527706/100‑1 (MQ=255)                                             tCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATTCCGGCCATTAACt                                                                                                                                  >  2:527706/1‑100 (MQ=255)                                                        ggtCTTGGCCCCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTgg                                                                     <  2:16001/150‑1 (MQ=255)                                                          tCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACgg                                                                                                                          >  2:373220/1‑95 (MQ=255)                                                          tCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACgg                                                                                                                          <  1:373220/95‑1 (MQ=255)                                                                cACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGTTTGCGCGTGGGGCTTTCa                                                             >  1:86055/1‑150 (MQ=255)                                                                 aCCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCtt                                                                                          >  1:128479/1‑120 (MQ=255)                                                                 aCCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCtt                                                                                          <  2:128479/120‑1 (MQ=255)                                                                     gCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTa                                                        <  1:674407/150‑1 (MQ=255)                                                                                ggTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGAGCGCCGAGGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTg                                             <  2:73809/150‑1 (MQ=255)                                                                                  tCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGc                                           <  1:534156/150‑1 (MQ=255)                                                                                    aTGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagctgatctccttggccgtggctgtgaccacccgctgcg                                         <  2:445189‑M2/150‑104 (MQ=255)                                                                                    aTGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGt                                              <  1:689559/145‑1 (MQ=255)                                                                                    aTGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGt                                              >  2:689559/1‑145 (MQ=255)                                                                                       tAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagctgatctccttggccgtggctgtgaccacccgctgcgacg                                      >  1:445189‑M2/1‑44 (MQ=255)                                                                                         gCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATgccggctacatgaccgccagcggtgcaggtgccaagaccaaccacctggatgccaagacccgcgagctgatctccttggccgtggctgtgaccacccgctgcgacggc                                    <  1:121862‑M2/150‑109 (MQ=255)                                                                                                         ggggAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCGAGGCGGTACTTtggtg                    <  2:478570/150‑1 (MQ=255)                                                                                                          gggAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGa                                                                         >  2:141896/1‑96 (MQ=255)                                                                                                          gggAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGa                                                                         <  1:141896/96‑1 (MQ=255)                                                                                                                        agaTCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCGAGGCGGTACTTTGGTGGGTAAACGCAGGTCa     >  2:11313/1‑150 (MQ=255)                                                                                                                          aTCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCAGCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCGAGGCGGTACTTTGGTGGGTAAACGCAGGTCACt   <  1:248118/150‑1 (MQ=255)                                                                                                                           tCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCGAGGCGGTACTTTGGTGGGTAAACGCATGTCACTc  <  2:560866/150‑1 (MQ=255)                                                                                                                                  |                                                                                                                                               TGGTCACAGCCACGGCCAAGGAGATCAGCTCGCGGGTCTTGGCATCCAGGTGGTTGGTCTTGGCACCTGCACCGCTGGCGGTCATGTAGCCGGCTACGGTGTCGGGGGAGAGTTGCTTGAGATCGCCGATGCCGGCCATTAACTGCTTACGGTAGGCGTCCCAGTCCATCATGCTCATCGTCTTCACCTTGGGGGTTGCGAGTGGAGCTTTCAGGCTAGTCGAAGCGTGGCACGTGCGAGGCGGTACTTTGGTGGGTAAACGCAGGTCACTC  >  NC_002947/2769991‑2770262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.