New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3588140 =	37 (1.310)	3 (0.130)	3/206	NT	10.3%	intergenic (+18/‑57)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	3588208 =	21 (0.890)					coding (12/1272 nt)	benE‑II	benzoate transport protein

GGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGA  >  NC_002947/3587991‑3588288                                                                                                                                                      |                                                                                                                                                      tcaccaacgggccggcgtaggagatcgtcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgct                                                                                                                                                       <  1:122075‑M1/1‑1 (MQ=255)    gAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCGGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcg                                                                                                                                                    >  2:214913/1‑150 (MQ=255)      ggtggtGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcgcg                                                                                                                                                  <  2:574494/150‑1 (MQ=255)       acgggccggcgtaggagatcgtcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCgg                                                                                                                                                 >  1:568174‑M1/144‑150 (MQ=255)           tgtTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCAt                                                                                                                                             <  1:264940/150‑1 (MQ=255)             ttCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGc                                                                                                                                           >  2:502436/1‑150 (MQ=255)                 tcgAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGc                                                                                                                                       <  2:269821/150‑1 (MQ=255)                 gtaggagatcgtcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGc                                                                                                                                       <  2:410682‑M1/17‑1 (MQ=255)                           ggATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGt                                                                                                                             >  2:745435/1‑150 (MQ=255)                            tcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCa                                                                                                                                              >  2:179868‑M1/123‑132 (MQ=255)                            tcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCa                                                                                                                                              <  1:179868‑M1/10‑1 (MQ=255)                            gATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTg                                                                                                                            >  1:629392/1‑150 (MQ=255)                                 tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCggg                                                                                                                                                >  1:288893/1‑125 (MQ=255)                                 tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCggg                                                                                                                                                <  2:288893/125‑1 (MQ=255)                                 tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGcc                                                                                                                       >  1:35197/1‑150 (MQ=255)                                          cGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcgc                                                                                                                                                   >  1:72249/1‑113 (MQ=255)                                          cGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcgc                                                                                                                                                   <  2:72249/113‑1 (MQ=255)                                             gCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgtt                                                                                                           <  1:84872/150‑1 (MQ=255)                                                    ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAAGTAAAGCCTGTGCAGTCGTT‑GTTGGAg                                                                                                   >  2:548654/1‑150 (MQ=255)                                                    ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATACCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTagag                                                                                                   >  2:122075/1‑150 (MQ=255)                                                       gACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCgg                                                                                                <  2:35197/150‑1 (MQ=255)                                                            ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATg                                                                                           >  2:203794/1‑150 (MQ=255)                                                            acagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGc                                                                                                  <  1:594947‑M1/53‑1 (MQ=255)                                                            acagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGc                                                                                                  >  2:594947‑M1/91‑143 (MQ=255)                                                             cagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGc                                                                                          >  1:650459‑M1/90‑150 (MQ=255)                                                                 tGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCcgc                                                                                      <  1:502436/150‑1 (MQ=255)                                                                           ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGtt‑gttg                                                                                                      >  2:582962/1‑124 (MQ=255)                                                                           ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGtt‑gttg                                                                                                      <  1:582962/124‑1 (MQ=255)                                                                           ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCa                                                                            >  1:71178/1‑150 (MQ=255)                                                                               ggCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGTCATGCCCTTTCCCACATGTGAAGCCTGTGCAGTCTTT‑GTTGGATCGGGCATGCCTGCGAAGCAGTCAacac                                                                        <  2:278817/150‑1 (MQ=255)                                                                                        gATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc                                                                                                              >  1:580832/1‑104 (MQ=255)                                                                                        gATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc                                                                                                              <  2:580832/104‑1 (MQ=255)                                                                                         aTGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAaga                                                              <  2:629392/150‑1 (MQ=255)                                                                                                gcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGcc                                                       >  2:20767/1‑150 (MQ=255)                                                                                                 cgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATACCCCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGCGCGCGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCca                                                      <  1:548654/150‑1 (MQ=255)                                                                                                     gcgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGCCGCCTGTGGAGTCGTTAGCCGGTG‑GTGCATAGCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACaaa                                                  <  1:203794/150‑1 (MQ=255)                                                                                                      cgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAg                                                 <  1:225933/150‑1 (MQ=255)                                                                                                                 gAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCACCAGCATAGATCGGCCGCTg                                      >  2:511911/1‑150 (MQ=255)                                                                                                                           ggaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgtt‑gtt                                                                                                       <  1:725549/75‑1 (MQ=255)                                                                                                                           ggaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgtt‑gtt                                                                                                       >  2:725549/1‑75 (MQ=255)                                                                                                                            gaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgtg                                                                                                                   >  2:43785/1‑63 (MQ=255)                                                                                                                            gaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgtg                                                                                                                   <  1:43785/63‑1 (MQ=255)                                                                                                                                  tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt                        >  1:732570/1‑147 (MQ=255)                                                                                                                                  tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt                        <  2:732570/147‑1 (MQ=255)                                                                                                                                   gATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCAt                    <  1:214913/150‑1 (MQ=255)                                                                                                                                       cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc                                >  1:678176/1‑134 (MQ=255)                                                                                                                                       cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc                                <  2:678176/134‑1 (MQ=255)                                                                                                                                              tGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGa         <  2:71178/150‑1 (MQ=255)                                                                                                                                                  cTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCaa     <  1:20767/150‑1 (MQ=255)                                                                                                                                                     tttCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGa  >  2:367937/1‑150 (MQ=255)                                                                                                                                                     tttCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGa  >  2:315456/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGA  >  NC_002947/3587991‑3588288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.