New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3588140 =	37 (1.310)	3 (0.130)	3/206	NT	10.3%	intergenic (+18/‑57)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	3588208 =	21 (0.890)					coding (12/1272 nt)	benE‑II	benzoate transport protein

CCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGTTGGTGA  >  NC_002947/3588065‑3588356                                                                                                                                                 |                                                                                                                                                     ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCa                                                                                                                                                >  1:71178/1‑150 (MQ=255)     ggCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGTCATGCCCTTTCCCACATGTGAAGCCTGTGCAGTCTTT‑GTTGGATCGGGCATGCCTGCGAAGCAGTCAacac                                                                                                                                            <  2:278817/150‑1 (MQ=255)               aTGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAaga                                                                                                                                  <  2:629392/150‑1 (MQ=255)                      gcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGcc                                                                                                                           >  2:20767/1‑150 (MQ=255)                       cgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATACCCCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGCGCGCGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCca                                                                                                                          <  1:548654/150‑1 (MQ=255)                           gcgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGCCGCCTGTGGAGTCGTTAGCCGGTG‑GTGCATAGCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACaaa                                                                                                                      <  1:203794/150‑1 (MQ=255)                            cgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAg                                                                                                                     <  1:225933/150‑1 (MQ=255)                                       gAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCACCAGCATAGATCGGCCGCTg                                                                                                          >  2:511911/1‑150 (MQ=255)                                                        tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt                                                                                            <  2:732570/147‑1 (MQ=255)                                                        tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt                                                                                            >  1:732570/1‑147 (MQ=255)                                                         gATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCAt                                                                                        <  1:214913/150‑1 (MQ=255)                                                             cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc                                                                                                    >  1:678176/1‑134 (MQ=255)                                                             cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc                                                                                                    <  2:678176/134‑1 (MQ=255)                                                                    tGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGa                                                                             <  2:71178/150‑1 (MQ=255)                                                                        cTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCaa                                                                         <  1:20767/150‑1 (MQ=255)                                                                           tttCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGa                                                                      >  2:315456/1‑150 (MQ=255)                                                                           tttCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGa                                                                      >  2:367937/1‑150 (MQ=255)                                                                                  GGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct                                                               >  1:367937‑M1/1‑150 (MQ=255)                                                                                    gcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCtg                                                              >  1:650459‑M2/62‑150 (MQ=255)                                                                                     ATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCt                                                                                                           <  1:415630‑M1/103‑1 (MQ=255)                                                                                     ATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCt                                                                                                           >  2:415630‑M1/1‑103 (MQ=255)                                                                                            gctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCtgt                                                             <  1:594947‑M2/90‑1 (MQ=255)                                                                                            gctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCtgt                                                             >  2:594947‑M2/54‑143 (MQ=255)                                                                                                             tgtgCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCCTTCCACCTCGGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCAtt                                    <  1:511911/150‑1 (MQ=255)                                                                                                                  aGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCac                               >  1:410682/1‑150 (MQ=255)                                                                                                                   gTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGa                                                                             <  2:281323/103‑1 (MQ=255)                                                                                                                   gTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGa                                                                             >  1:281323/1‑103 (MQ=255)                                                                                                                                gcgggcatgcccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTAc                  <  2:410682‑M2/133‑1 (MQ=255)                                                                                                                                       tgcccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCacga                             <  1:179868‑M2/122‑1 (MQ=255)                                                                                                                                       tgcccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCacga                             >  2:179868‑M2/11‑132 (MQ=255)                                                                                                                                          ccgcgaaGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGt        >  1:568174‑M2/8‑150 (MQ=255)                                                                                                                                                aGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGTTGGTGa  <  1:122075‑M2/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATCTCCTACGCCGGCCCGTTGGTGA  >  NC_002947/3588065‑3588356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.