| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3963032 | 24 (0.850) | 3 (0.120) | 3/224 | NT | 12.0% | intergenic (+34/+83) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator |
| ? | NC_002947 | = 3963072 | 22 (0.860) | intergenic (+74/+43) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator | |||||
AGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTC > NC_002947/3962884‑3963180 | aGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGc > 2:616901‑M1/1‑149 (MQ=255) gATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGAc > 2:743548/1‑150 (MQ=255) ccGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTg > 2:12165/1‑150 (MQ=255) ggTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGa < 2:274851/150‑1 (MQ=255) gTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGa > 2:524312/1‑149 (MQ=255) gTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGa < 1:524312/149‑1 (MQ=255) ttACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCtt > 2:145900/1‑150 (MQ=255) gcgGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTcg > 1:399547/1‑150 (MQ=255) ggATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTcgcg < 1:529384/150‑1 (MQ=255) cccAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGTAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcg < 1:194738‑M2/150‑3 (MQ=255) aGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGcgcccgcgaacaccggcaaagccggtgccctccaccgcgtcgccc < 2:186915‑M1/150‑46 (MQ=255) aGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGcgcccgcgaacaccggcaaagccggtgccctccaccgcgtcgccc > 1:186915‑M1/1‑105 (MQ=255) aGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCg < 2:642149/132‑1 (MQ=255) aGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCg > 1:642149/1‑132 (MQ=255) cTATGACGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACCCAAAGGCCACATGGTTTTTGGGGGAGCGGGCGcgcccgcgaacaccggcaaagccggtgccctccaccgcgtcgcccgctc < 1:616901‑M1/150‑50 (MQ=255) tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCAGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcc < 1:718069‑M2/150‑11 (MQ=255) gcgagATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAg < 2:171489/98‑1 (MQ=255) gcgagATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAg > 1:171489/1‑98 (MQ=255) gcgGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAgcg > 1:465821/1‑150 (MQ=255) gAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCaa > 1:469336/1‑150 (MQ=255) aaTTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAAt > 2:129617/1‑150 (MQ=255) cGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATcca < 1:614929/150‑1 (MQ=255) cGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTAGCCGCAGGGCCAATACCGCGCATCATcca > 2:174042/1‑150 (MQ=255) gCAAAGGCAACGCGGTTTTTGGGGGAGCGGGGAACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTTGCACAGGAGGGTCACCGCGGCAAACTTCTCGCCTCGGCGCCCATTCCGCGCATCCTCCaccaccgcgg > 2:84996/1‑146 (MQ=25) ggCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGc < 1:12165/150‑1 (MQ=255) tttttGGGGGAGCGGGCGACGCGGAGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAAt < 1:750668/77‑1 (MQ=255) tttttGGGGGAGCGGGCGACGCGGAGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAAt > 2:750668/1‑77 (MQ=255) ggAGCGGGCGcgcccgcgaacaccggcaaagccggtgccctccaccgcgtcgcccgctcccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcctgcgcaatcagcatccgctggatctcgctcgacccttcata < 1:718069‑M1/150‑141 (MQ=255) ggAGCGGGCGACGCTGTGGAGGGCACCGGCTTTGCCGGGGTTCGCGGGCGCGCCCTCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGc > 2:592563/1‑150 (MQ=255) gAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcccccaaaaaccatgtggcctttgggttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccgtcatag < 1:616901‑M2/150‑102 (MQ=255) aGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAg < 2:718069/150‑1 (MQ=255) cGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGtt < 2:465821/150‑1 (MQ=255) cGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGtt < 1:307573/150‑1 (MQ=255) gggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccttcatagatct < 2:186915‑M2/150‑106 (MQ=255) gggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccttcatagatct > 1:186915‑M2/1‑45 (MQ=255) ggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCaaa > 1:711686/1‑77 (MQ=255) ggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCaaa < 2:711686/77‑1 (MQ=255) cgcgcccgcgaacaccggcaaagccggtgccctccaccgcgtcgcccgctaccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccttcatagatctggg < 1:194738‑M1/150‑149 (MQ=255) cGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTCCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTc < 1:84996/150‑1 (MQ=255) | AGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTC > NC_002947/3962884‑3963180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |