New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3963032	24 (0.850)	3 (0.120)	3/224	NT	12.0%	intergenic (+34/+83)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator
	?	NC_002947	= 3963072	22 (0.860)					intergenic (+74/+43)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator

CCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGT  >  NC_002947/3962925‑3963221                                                                                                                                                    |                                                                                                                                                      cccAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGTAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcg                                                                                                                                                     <  1:194738‑M2/150‑3 (MQ=255)         tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCAGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcc                                                                                                                                             <  1:718069‑M2/150‑11 (MQ=255)                                               gcgGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAgcg                                                                                                       >  1:465821/1‑150 (MQ=255)                                                   gAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCaa                                                                                                   >  1:469336/1‑150 (MQ=255)                                                    aaTTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAAt                                                                                                  >  2:129617/1‑150 (MQ=255)                                                                   cGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATcca                                                                                   <  1:614929/150‑1 (MQ=255)                                                                   cGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTAGCCGCAGGGCCAATACCGCGCATCATcca                                                                                   >  2:174042/1‑150 (MQ=255)                                                                            gCAAAGGCAACGCGGTTTTTGGGGGAGCGGGGAACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTTGCACAGGAGGGTCACCGCGGCAAACTTCTCGCCTCGGCGCCCATTCCGCGCATCCTCCaccaccgcgg                                                                          >  2:84996/1‑146 (MQ=25)                                                                                 ggCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGc                                                                     <  1:12165/150‑1 (MQ=255)                                                                                           tttttGGGGGAGCGGGCGACGCGGAGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAAt                                                                                                                                    >  2:750668/1‑77 (MQ=255)                                                                                           tttttGGGGGAGCGGGCGACGCGGAGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAAt                                                                                                                                    <  1:750668/77‑1 (MQ=255)                                                                                                   ggAGCGGGCGACGCTGTGGAGGGCACCGGCTTTGCCGGGGTTCGCGGGCGCGCCCTCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGc                                                   >  2:592563/1‑150 (MQ=255)                                                                                                    gAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcccccaaaaaccatgtggcctttgggttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccgtcatag                                                  <  1:616901‑M2/150‑102 (MQ=255)                                                                                                     aGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAg                                                 <  2:718069/150‑1 (MQ=255)                                                                                                       cGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGtt                                               <  1:307573/150‑1 (MQ=255)                                                                                                       cGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGtt                                               <  2:465821/150‑1 (MQ=255)                                                                                                        gggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccttcatagatct                                              >  1:186915‑M2/1‑45 (MQ=255)                                                                                                        gggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGcgcccgctcccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccttcatagatct                                              <  2:186915‑M2/150‑106 (MQ=255)                                                                                                         ggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCaaa                                                                                                                      >  1:711686/1‑77 (MQ=255)                                                                                                         ggCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCaaa                                                                                                                      <  2:711686/77‑1 (MQ=255)                                                                                                           cGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTCCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTc                                           <  1:84996/150‑1 (MQ=255)                                                                                                                 ggTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAg                                     <  2:469336/150‑1 (MQ=255)                                                                                                                   tGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACCGAACCGCCAGTTGCGCCTTGAGGt                                   >  2:136573/1‑150 (MQ=38)                                                                                                                           aCCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATc                           <  2:194738/150‑1 (MQ=255)                                                                                                                           aCCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATc                           >  1:639915/1‑150 (MQ=255)                                                                                                                              ggCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAg                        <  2:639915/150‑1 (MQ=255)                                                                                                                                      cGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCAc                >  1:366934/1‑150 (MQ=255)                                                                                                                                                    gcgcccgctcccccaaaaaccgcgttgcctttgcgttacagcggatagtttttcaattcccgcgcaatcagcatccgctggatctcgctcgacccttcatagatctgggtaatccgcgcatcccggtaatagcgctccaccgggtaatct  >  2:616901‑M2/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCCTTGAGGTAGTCGATCCAGGTGCGCACCTTGGCGTCCAGGT  >  NC_002947/3962925‑3963221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.