| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5112628 | 29 (1.030) | 5 (0.220) | 4/202 | NT | 14.1% | intergenic (‑169/+97) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein |
| ? | NC_002947 | = 5112689 | 37 (1.600) | intergenic (‑230/+36) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein | |||||
GAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCC > NC_002947/5112480‑5112777 | gAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCAc > 2:159585/1‑150 (MQ=255) gAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGccc > 2:498259/1‑150 (MQ=255) aCAGTTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTc < 1:404570/150‑1 (MQ=255) ggTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTAGTCATTATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCGtgcccgcgaaga < 1:656049‑M1/150‑13 (MQ=255) aCGCGCCAAAAGGCCGCAAATCATACGCGGTTCAGCAGGGGAACGCACGGGAGGGGAGAGGGGGTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACCTGTTGCCGCAAcc > 2:385057/1‑150 (MQ=255) gcCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCg < 1:695707/150‑1 (MQ=255) gcCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCg > 2:236719/1‑150 (MQ=255) cAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCggg > 2:427003/1‑150 (MQ=255) atcatACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATAccc < 1:236719/150‑1 (MQ=255) atcatACGCGGTTCATCAGGGGAACGCACTGGAGCGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGCGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATAccc < 1:510303/150‑1 (MQ=255) tACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACACCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCtgt < 2:669398/150‑1 (MQ=255) gcgGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGt > 2:270038/1‑114 (MQ=255) gcgGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGt < 1:270038/114‑1 (MQ=255) catcaGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCggg < 2:1006/150‑1 (MQ=255) aGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtg > 1:159585‑M2/1‑148 (MQ=255) gAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCt < 1:362859/120‑1 (MQ=255) gAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCt > 2:362859/1‑120 (MQ=255) gAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccg > 1:498259‑M2/1‑144 (MQ=255) aCGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGTGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcg < 2:731395‑M2/150‑9 (MQ=255) cGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcga > 2:561239‑M1/1‑80 (MQ=255) gCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaa < 1:561239‑M1/150‑72 (MQ=255) tGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcgaagagg < 2:328036‑M2/150‑15 (MQ=255) gAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaaga > 1:436572‑M1/1‑73 (MQ=255) gAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaaga < 2:436572‑M1/146‑74 (MQ=255) ggTAGAGGGTTTTGTGGGGCTGAGAATGATTTTATGCCCAATGGGATCTGTGCTAGTCCTTTACCGGGCGCGGGTGTTTCTACAGGTTTCCGCAACCTTCGGTGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGc > 2:649447/1‑150 (MQ=19) gTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcgaagaggccagca < 1:597451‑M2/150‑21 (MQ=255) agGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAgg < 1:427003/150‑1 (MQ=255) gCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGgcagca < 1:143708/137‑1 (MQ=255) gCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGgcagca > 2:143708/1‑137 (MQ=255) gCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGc > 1:574833/1‑150 (MQ=255) cATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACCCCCGCCCCCACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTAGCAGCGGGCTTGCCCTCGAACGGGCCAGCCCAGGCAGCAGAACAATCAggacg > 1:421324/1‑147 (MQ=255) gATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATAccc > 2:662955/1‑89 (MQ=255) gATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATAccc < 1:662955/89‑1 (MQ=255) ttttCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTt > 1:411825‑M2/1‑102 (MQ=255) ttttCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTt < 2:411825‑M2/103‑2 (MQ=255) ttCCGCCCAGTGGTCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTTCTACTTGTTCACGAAACCGTCGCGGCCGGTGTTTCCCCTGTGGTATCCGGCTTGTCCGCGAAGGGGCCAGCACAGGCAGCAGGTTAACCAGGGCTGAGCCtt < 2:597451/150‑1 (MQ=255) tGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGAt < 1:385057/150‑1 (MQ=255) aGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATctcct > 1:195550/1‑150 (MQ=255) aGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCCGGGCCTGTGATACCCCTGTGGGACCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATctcct > 2:561184/1‑150 (MQ=255) tttGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCAc > 2:664274/1‑150 (MQ=255) tgCTGGCCTCTTCGCGGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctac < 1:597451‑M1/150‑131 (MQ=255) gCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGaggctc > 2:49522/1‑150 (MQ=255) ccTCTTCGCGGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctcca < 2:328036‑M1/150‑137 (MQ=255) tctTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctc < 2:436572‑M2/146‑74 (MQ=255) tctTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctc > 1:436572‑M2/1‑73 (MQ=255) ttCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctccagtgc < 1:561239‑M2/150‑80 (MQ=255) tCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctccagtgcg > 2:561239‑M2/1‑70 (MQ=255) cgcgGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccacgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctccagtgcgt < 2:731395‑M1/150‑143 (MQ=255) gcgGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGa < 2:190085/137‑1 (MQ=255) gcgGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGa > 1:190085/1‑137 (MQ=255) cgGGCAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctccagtgcgttc > 1:498259‑M1/1‑6 (MQ=255) ggCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCcctc > 1:234481/1‑150 (MQ=255) gCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCt < 2:324876/51‑1 (MQ=255) gCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCt > 1:324876/1‑51 (MQ=255) cAagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaagaggccagcacaaagcccactgggcagaaaatcatgcccagccccacaaaaccctctaccctccagtgcgttcccct > 1:159585‑M1/1‑2 (MQ=255) aagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaagaggccagcacaaagcccactgggcagaaaa > 1:411825‑M1/1‑1 (MQ=255) aagcccgctcccacaggggtatcacaggccccgaaggttgcgcgaacatgtaggagcgggcgtgcccgcgaagaggccagcacaaagcccactgggcagaaaa < 2:411825‑M1/103‑103 (MQ=255) aCGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAgg > 1:523139/1‑102 (MQ=255) aCGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAgg < 2:523139/102‑1 (MQ=255) aCGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTcccc < 1:328036/150‑1 (MQ=255) | GAATGAAAACAGGTTTCTGGCGACGAACGCGCCAAAAGGCCGCGCATCATACGCGGTTCATCAGGGGAACGCACTGGAGGGTAGAGGGTTTTGTGGGGCTGGGCATGATTTTCTGCCCAGTGGGCTTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTCCTACATGTTCGCGCAACCTTCGGGGCCTGTGATACCCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCC > NC_002947/5112480‑5112777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |